RNA id: TU266723


Basic Information

Item Value
RNA id TU266723
length 343
lncRNA type inter_gene
GC content 0.61
exon number 1
gene id G196573
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10263037 ~ 10263379 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccttgACCACAGGCCAGTAGTATGGCTGTCCGAGCAGTTTGGTGATGGCGGGGATGCCGTAGTGAAGCCGCACGGCATTCTGGGCCAgttctgcgtgtgtgtgtcggctGGTGAGGTGTCTGAGCGCACAGACGGCCGGCTCGCACACATCCTCCTTCTGCCCCGCCCTCAGCACGGCATGGATCAGCGCCTCCACGCCCCCGCTCTGACACACCAGTGCCTTGTTGCGTGCGTTATTACACGTCAGATTACTGAGGATACCCCGTGGCACAGGTCAGCATGTTCAGGTCATCAGAACCCAGCTGAGTCACCAGGATCTGCAGCAGCCCGTCCAGACCCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266722 lncRNA upstream 1194 10261574 ~ 10261843 (+) True G196572
TU266720 lncRNA upstream 14771 10244141 ~ 10248266 (+) True G196570
TU266684 lncRNA upstream 132273 10130502 ~ 10130764 (+) True G196534
TU266680 lncRNA upstream 178262 10081012 ~ 10084775 (+) True G196531
TU266681 lncRNA upstream 180538 10081012 ~ 10082499 (+) False G196531
TU266775 lncRNA downstream 206419 10469798 ~ 10470148 (+) True G196618
TU266776 lncRNA downstream 218028 10481407 ~ 10484765 (+) True G196619
TU266830 lncRNA downstream 363988 10627367 ~ 10628051 (+) True G196649
XR_002651681.1 lncRNA downstream 368976 10632355 ~ 10637265 (+) True LOC111195506
XR_002651682.1 lncRNA downstream 368980 10632359 ~ 10637265 (+) False LOC111195506
XM_022683420.1 mRNA upstream 81805 10180453 ~ 10181232 (+) True LOC111195551
XM_007230555.2 mRNA upstream 201938 10059634 ~ 10061099 (+) False dpm3
XM_022683025.1 mRNA upstream 248740 9986807 ~ 10014297 (+) False LOC103044437
XM_007230556.3 mRNA upstream 248740 9987752 ~ 10014297 (+) True LOC103044437
XM_022683026.1 mRNA upstream 251658 9986802 ~ 10011379 (+) False LOC103044437
XM_015602245.2 mRNA downstream 252416 10515795 ~ 10518308 (+) True LOC103044360
XM_022683028.1 mRNA downstream 273101 10536480 ~ 10539349 (+) True LOC107197050
XM_022683029.1 mRNA downstream 282197 10545576 ~ 10563252 (+) True LOC107197051
XM_007236498.3 mRNA downstream 306924 10570303 ~ 10573156 (+) True LOC103043362
XM_007236497.3 mRNA downstream 330356 10593735 ~ 10598163 (+) True LOC103042831
trnap-agg_20 other upstream 35234 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 35543 10227422 ~ 10227494 (+) True trnap-agg_19
trnap-agg_18 other upstream 35861 10227106 ~ 10227176 (+) True trnap-agg_18
trnap-agg_17 other upstream 37337 10225630 ~ 10225700 (+) True trnap-agg_17
trnap-agg_16 other upstream 43091 10219875 ~ 10219946 (+) True trnap-agg_16
TU266794 other downstream 228167 10491546 ~ 10492101 (+) True G196633
TU267213 other downstream 1138815 11402194 ~ 11417588 (+) False mrpl24
TU267214 other downstream 1138815 11402194 ~ 11417588 (+) False mrpl24
TU267531 other downstream 2451989 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 2625979 12889358 ~ 12928524 (+) True LOC103029421

Expression Profile