RNA id: TU266917


Basic Information

Item Value
RNA id TU266917
length 336
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G196686
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10779150 ~ 10781295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttagcaaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaactgcctagcaaccactggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatatgttagcaactgcctagcaaccacttagcaaccactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651681.1 lncRNA upstream 141885 10632355 ~ 10637265 (+) True LOC111195506
XR_002651682.1 lncRNA upstream 141885 10632359 ~ 10637265 (+) False LOC111195506
TU266830 lncRNA upstream 151099 10627367 ~ 10628051 (+) True G196649
TU266776 lncRNA upstream 294385 10481407 ~ 10484765 (+) True G196619
TU266775 lncRNA upstream 309002 10469798 ~ 10470148 (+) True G196618
TU266938 lncRNA downstream 3865 10785160 ~ 10811742 (+) True G196687
TU266952 lncRNA downstream 57619 10838914 ~ 10856867 (+) True G196697
TU266906 lncRNA downstream 64763 10846058 ~ 10849440 (+) True G196684
TU266912 lncRNA downstream 65429 10846724 ~ 10861538 (+) False G196684
TU266910 lncRNA downstream 78080 10859375 ~ 10863254 (+) False G196684
XM_007236486.3 mRNA upstream 8117 10740887 ~ 10771033 (+) True LOC103040077
XM_022683033.1 mRNA upstream 152733 10610814 ~ 10626417 (+) False LOC103040599
XM_007230756.3 mRNA downstream 14827 10796122 ~ 10803111 (+) True LOC103032369
XM_007230758.3 mRNA downstream 37742 10819037 ~ 10838287 (+) True LOC103032890
XM_007230762.3 mRNA downstream 83443 10864738 ~ 10878687 (+) True utp18
XM_007230767.3 mRNA downstream 100480 10881775 ~ 10902503 (+) True LOC103035340
XM_007230770.3 mRNA downstream 160343 10941638 ~ 10954911 (+) True ube2m
TU266794 other upstream 287049 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 551347 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 551656 10227422 ~ 10227494 (+) True trnap-agg_19
trnap-agg_18 other upstream 551974 10227106 ~ 10227176 (+) True trnap-agg_18
trnap-agg_17 other upstream 553450 10225630 ~ 10225700 (+) True trnap-agg_17
TU267213 other downstream 620899 11402194 ~ 11417588 (+) False mrpl24
TU267214 other downstream 620899 11402194 ~ 11417588 (+) False mrpl24
TU267531 other downstream 1934073 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 2108063 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 2175565 12956860 ~ 12964344 (+) False s100a14

Expression Profile