RNA id: TU267252


Basic Information

Item Value
RNA id TU267252
length 407
lncRNA type inter_gene
GC content 0.51
exon number 3
gene id G196923
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11493577 ~ 11500681 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

actagattgcagttcctacagaaactgcgagtgtgattgcagtgctggctggtatctgctgtggtgttgctaaggtgttgctaagtggttgctaaggtgtggctatggtatccggggtggttgctaaggtgttgctaaggtgttgctaagtggttgctaggtggttgctaaggtgttgctaaggtgttgctaggcggttgctaaggtgttgctatggtatctggggtggttgctaaggtgttgctaggtggttgctaggtggttgctatggtgttgctaggcggttgctaaggtgttgctatggtatccggggtggttgctaaggtgttgctaggtggttgctaggtggttgctaaggtgttgctagccggttgctaaggtgttgctatggtatccggggtggttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267239 lncRNA upstream 6477 11486817 ~ 11487100 (+) True G196918
TU267235 lncRNA upstream 9710 11462727 ~ 11483867 (+) True G196914
TU267034 lncRNA upstream 134397 11356537 ~ 11359180 (+) True G196762
TU267030 lncRNA upstream 151953 11340907 ~ 11341624 (+) True G196759
TU266985 lncRNA upstream 441714 11050464 ~ 11051863 (+) True G196728
TU267263 lncRNA downstream 10904 11510690 ~ 11516573 (+) True G196926
TU267275 lncRNA downstream 51918 11551704 ~ 11554569 (+) False polr2k
TU267276 lncRNA downstream 51918 11551704 ~ 11554569 (+) False polr2k
TU267290 lncRNA downstream 74245 11574031 ~ 11575281 (+) True G196940
TU267287 lncRNA downstream 126596 11626382 ~ 11652875 (+) True G196939
XM_007230811.3 mRNA upstream 11186 11450126 ~ 11482391 (+) True adck5
XM_022683050.1 mRNA upstream 11186 11450126 ~ 11482391 (+) False adck5
XM_015608074.2 mRNA upstream 11186 11450126 ~ 11482391 (+) False adck5
XM_007230810.3 mRNA upstream 46100 11434179 ~ 11447477 (+) True lix1l
XM_007230807.3 mRNA upstream 66918 11419729 ~ 11426659 (+) True prcc
XM_015608077.2 mRNA downstream 51874 11551660 ~ 11554583 (+) True polr2k
XM_007230816.3 mRNA downstream 56286 11556072 ~ 11577909 (+) True LOC103022883
XM_022683423.1 mRNA downstream 179145 11678931 ~ 11682473 (+) True LOC111195553
XM_007254671.3 mRNA downstream 215029 11714815 ~ 11745638 (+) True grhl2
XM_022683054.1 mRNA downstream 215417 11715203 ~ 11745638 (+) False grhl2
TU267213 other upstream 75989 11402194 ~ 11417588 (+) False mrpl24
TU267214 other upstream 75989 11402194 ~ 11417588 (+) False mrpl24
TU266794 other upstream 1001476 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 1265774 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 1266083 10227422 ~ 10227494 (+) True trnap-agg_19
TU267531 other downstream 1215582 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 1389572 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 1457074 12956860 ~ 12964344 (+) False s100a14
TU267853 other downstream 1824600 13324386 ~ 13362658 (+) True G197334
TU268310 other downstream 2966633 14466419 ~ 14468882 (+) False tac1

Expression Profile