RNA id: TU267511


Basic Information

Item Value
RNA id TU267511
length 2385
lncRNA type inter_gene
GC content 0.34
exon number 3
gene id G197090
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12622009 ~ 12624605 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggatttgtttttgtttgcttgtttatttcatttttttttcattattttcaatACTGTTCCAGACTGAACAAACAGTGGTTTGTAAACCACAAagcacacatttatatttaaaaccgTACATTCACAGACAAACACAATTCAATTTTATGGTTCCCTTCATATTAACTATAATTATTGTAGACtgcatgtccaaatgtttgtataCACCCCTTCTAAACATGTATTCAGGTCATTTAAGACATAAAACAGCTTTTCTAGTGTAGTGGAGCAGTGGTACTGTCTTCTCTTCAATTATGGTgcttcatccaatacttttgggatgagttgatgaGTTAGGGAGTCATTGACGAGGTGTTGGtgttgatcatccaacATTTTTGGACAGTATAGACAGTtataaaaaaacccaaaaaaagaacagaaaacactCTTTCATATaccattgatttaaaaaaacaaaaacagtgaataaacatgtgtcccaatacttttgtctattgTTGACCAAAACCTGTactaattacattatatattttatgtatagaaaaaaaaatctacacacattaacatacacactcactagCTACATTTAGCACCATAGACATGTCCAAGTATTGGTATCTGTGCATTTcaaacaataaaagcatttatttattgtttatttttcattttatgcaGTAATCTGTAGTGCTGAAAAGtatgattttctgttttttattgctttttgtcCATCAGCATTTTCTGACTGCAATATCCGACATGGATTATGCAAAGACTTCATACGACCATTGGGAATTTGCCCAGAGATAAACAAATCCTGACTGCTAGCGTAGCATGTAGCATGTAGCAGCTAATAAATACTGATATTAGATTTTTTAGCAGTAAAGTTAGCTATCTATTCTTCTGCATTTACCAGCTAGCAAAACAAATCAATCAGCCACatctcaagctttttttttaatatccacCTTCTTGTCAAGATACATCAACATAAATGGGGGAAGtctttaaactaaaaaatctctttttaaagGCAAATTAAGCATTACTGGAAGAAGAGAGTATCCCAATGTGAGAATAGATGTAgcacattttttctttaaagtaatCATGTTCATTGAActgataatacatttataaagtgttttaaactgaagtATTGTATTATACAGCAATCACCAACATGGATATAATGCCATTCTTATTGTGTGAATTATCTATCAAAAAGCTATGTAaccattaaaaaatgaataagaaaaaaacatatttacaaacaCATGTGGACACCAGAGTGCACAATACAGCCATAATACAACAATGCCATTGTAAAGCTACATATTGTGACTGTGACTAAGGTGGCCTTtactaaatatgaaataataatccaaaataaGTTGGACTCTAACtttagtttagagtttagttcTTTAGTCGATACAGTACTTTGATTCACCAAAACAGAAAACCTCATCTGTTCATTCAGGAAACTTACAGCACTGTGATCTGTGATTGGTTAAAGGGTTGATTAGCTTATTACTATATTTTGTGAACATCACAAAGTACTGCAAGGGATTAATAATACGAGAACAACAAACAGTACTGTGCAGCTCTAGTAAATTCTAGCATTGATTCTCTGaaacagaacaaacaaacaacacacattCATGCTTACACAACACACTCTCAAACTCCTACAAAATaactcacacatgcacacaagcacacacacaaagtctACAAAGAGTGGTTTTAAGCACTGATGGCTACTGGTGTGAAGCCTAGTCTCACATTCATGTCTTGATTCAGTTgcctaaagccctatccagatgggattaggtcctctgtgattttattcctgtccagaacgaccatgtatgtgtttttcttaggcattctctgaaaaaattacaggctgaattatctactgtttttcactgaactctgtggtcctccggtaattttttTTCCGTCCGGATGCAtaatctctgagtttcgtcacctcacgtttaataaaatagctgtttGTCCACTGCATGggcatgtaaacacaacagggagtggaaatggaggagctactgaatgtgatgtcatgtgactgagaaagccaaaacactcactggtcctcctgttttttcagttgcagtccagatgcaagagttttatcactgagtagaagtgtgaaatatttttcacagacgtccccctaaagaaactaatcctgtcctgATATTTTGCTTGTATCAATTCTAACCTTAGTTGGCTTCTTGATTAAATTGTTCATATAGTTAATTTAGGCACACACATATCAGGTTCCTCCCAGAAGATGTTGCTATACAGTTCtcagaaaaattaagagaccactttagtttctaaatcagtttctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267355 lncRNA upstream 627688 11993182 ~ 11994321 (+) True G196986
TU267353 lncRNA upstream 662059 11939379 ~ 11959950 (+) True G196984
TU267348 lncRNA upstream 692758 11873962 ~ 11929251 (+) True G196981
XR_002651687.1 lncRNA upstream 692896 11927836 ~ 11929113 (+) True LOC111195509
TU267339 lncRNA upstream 771268 11823203 ~ 11850741 (+) True G196974
TU267520 lncRNA downstream 16173 12640778 ~ 12641014 (+) True G197097
TU267523 lncRNA downstream 37446 12662051 ~ 12693905 (+) True G197099
TU267537 lncRNA downstream 90763 12715368 ~ 12774496 (+) False G197106
TU267533 lncRNA downstream 145318 12769923 ~ 12774496 (+) False G197106
TU267535 lncRNA downstream 145318 12769923 ~ 12774496 (+) False G197106
XM_007254697.3 mRNA upstream 6827 12535431 ~ 12615182 (+) True LOC103026238
XM_007254677.3 mRNA upstream 602148 12004826 ~ 12019861 (+) True rnmt
XM_022683057.1 mRNA upstream 630526 11873941 ~ 11991483 (+) True ldlrad4
XM_022683058.1 mRNA upstream 630526 11887148 ~ 11991483 (+) False ldlrad4
XM_007254679.3 mRNA upstream 630526 11948287 ~ 11991483 (+) False ldlrad4
XM_007254699.3 mRNA downstream 79249 12703854 ~ 12708168 (+) True LOC103026839
XM_022683424.1 mRNA downstream 159573 12784178 ~ 12788778 (+) True LOC111195554
XM_015607227.2 mRNA downstream 268614 12893219 ~ 12896452 (+) False LOC107197759
XM_022683062.1 mRNA downstream 268616 12893221 ~ 12896452 (+) True LOC107197759
XM_022683426.1 mRNA downstream 274122 12898727 ~ 12904626 (+) True LOC103028905
TU267213 other upstream 1204421 11402194 ~ 11417588 (+) False mrpl24
TU267214 other upstream 1204421 11402194 ~ 11417588 (+) False mrpl24
TU266794 other upstream 2129908 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 2394206 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 2394515 10227422 ~ 10227494 (+) True trnap-agg_19
TU267531 other downstream 90763 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 264753 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 332255 12956860 ~ 12964344 (+) False s100a14
TU267853 other downstream 699781 13324386 ~ 13362658 (+) True G197334
TU268310 other downstream 1841814 14466419 ~ 14468882 (+) False tac1

Expression Profile