RNA id: TU267626


Basic Information

Item Value
RNA id TU267626
length 284
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G197174
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12885202 ~ 12885485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCCACTGCATCCACCTCCAGCTCAAGGACTCTCTGAAACACACATGACAATATCAGAAGTAGACATGGAGCGGTCACTATTGTGAAGCACAATCATTATGATTACAATATAATAGAAAGAAATATGTATGATTTATACAATGTTGACAGTATGCATCAAGGGTGGGAATGTATAGGACGTACTTGCACATAGTTATATCGCAATTCTTTGACTCTTTCTGAATTGCGCTCAAATGGCACCCTGTAGACCTGCTTCATCCTCAGTTTATTTCTGTGCAAGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267537 lncRNA upstream 110706 12715368 ~ 12774496 (+) False G197106
TU267533 lncRNA upstream 110706 12769923 ~ 12774496 (+) False G197106
TU267535 lncRNA upstream 110706 12769923 ~ 12774496 (+) False G197106
TU267523 lncRNA upstream 191297 12662051 ~ 12693905 (+) True G197099
TU267520 lncRNA upstream 244188 12640778 ~ 12641014 (+) True G197097
TU267627 lncRNA downstream 138 12885623 ~ 12886011 (+) True G197175
TU267659 lncRNA downstream 43584 12929069 ~ 12929331 (+) True G197188
TU267660 lncRNA downstream 43924 12929409 ~ 12929695 (+) True G197189
TU267661 lncRNA downstream 45121 12930606 ~ 12930943 (+) True G197190
TU267668 lncRNA downstream 52872 12938357 ~ 12938641 (+) True G197197
XM_022683424.1 mRNA upstream 96424 12784178 ~ 12788778 (+) True LOC111195554
XM_007254699.3 mRNA upstream 177034 12703854 ~ 12708168 (+) True LOC103026839
XM_007254697.3 mRNA upstream 270020 12535431 ~ 12615182 (+) True LOC103026238
XM_007254677.3 mRNA upstream 865341 12004826 ~ 12019861 (+) True rnmt
XM_022683058.1 mRNA upstream 893719 11887148 ~ 11991483 (+) False ldlrad4
XM_015607227.2 mRNA downstream 7734 12893219 ~ 12896452 (+) False LOC107197759
XM_022683062.1 mRNA downstream 7736 12893221 ~ 12896452 (+) True LOC107197759
XM_022683426.1 mRNA downstream 13242 12898727 ~ 12904626 (+) True LOC103028905
XM_022683427.1 mRNA downstream 39605 12925090 ~ 12928527 (+) False LOC103029421
XM_007254715.3 mRNA downstream 71185 12956670 ~ 12964349 (+) True s100a14
TU267531 other upstream 110706 12715368 ~ 12774496 (+) True G197106
TU267213 other upstream 1467614 11402194 ~ 11417588 (+) False mrpl24
TU267214 other upstream 1467614 11402194 ~ 11417588 (+) False mrpl24
TU266794 other upstream 2393101 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 2657399 10227734 ~ 10227803 (+) True trnap-agg_20
TU267630 other downstream 3873 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 71375 12956860 ~ 12964344 (+) False s100a14
TU267853 other downstream 438901 13324386 ~ 13362658 (+) True G197334
TU268310 other downstream 1580934 14466419 ~ 14468882 (+) False tac1
TU268380 other downstream 1908935 14794420 ~ 14796728 (+) True G197665

Expression Profile