RNA id: TU268011


Basic Information

Item Value
RNA id TU268011
length 652
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id LOC103039008
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13653684 ~ 13658653 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCGCACTGACCAGCATGTGAGGAGCACGAGAATGATCAGGACTGCGAGCACGTGGAGTAAACGCTGCCTTTACTACAGTttatcacattattattattataaaagcagCTTTTTAGTTGTTAGAATGGGCTTTGCACTGTACTGCTGTACACGCGGTTTAGCTATGGGTGCTTTTACGTGCTTGTATGTTTATAATCCATCTTAAAGCACTAACTTACTTAATGCTCGATCTAATTTATCTGCTTTATGGTACATCACTGAAACTAAGTGTTCATACTGAGTGTTCGGTAGAAAGCTGATGATCTGTGTactggaggagCTTCTCTGAATGTTCTGAATGCCACCATATTTTATACCAGGTTTGGGAGAACCAAAGATTTCAGGGAACTCTGAATGTTCTCAGAATGTTCTGAATGTCACCATTAGTTGTGCCAGGTGTGCTGGAACTAAAGTCTTGTGTGAAGTCTGGAGGTAAaagGTTCTCAGAATGTCACCATTTGTTGTGCCAGTTAAGATGGAACTAAAGACATATGATGATATCTGGATGAGATCAGTGCTCTGGTGATATGCTGTTGGATCTGCAAGAACAACACTGTTAACTTAAATGTGAAACACTGTCATTATATTTATTCCTAAAGTATTAAgagtaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267967 lncRNA upstream 47730 13586233 ~ 13605958 (+) True G197410
TU267969 lncRNA upstream 60647 13589005 ~ 13593041 (+) True G197411
TU267963 lncRNA upstream 85877 13566368 ~ 13567811 (+) True G197406
TU267861 lncRNA upstream 178239 13453819 ~ 13475449 (+) True G197341
TU267860 lncRNA upstream 180617 13414360 ~ 13473071 (+) True G197340
TU268037 lncRNA downstream 59174 13717286 ~ 13718002 (+) True G197459
TU268082 lncRNA downstream 211434 13869546 ~ 13876652 (+) True G197480
TU268090 lncRNA downstream 240851 13898963 ~ 13900419 (+) True G197487
XR_002651731.1 lncRNA downstream 255972 13914084 ~ 13917087 (+) True LOC111195567
XR_002651732.1 lncRNA downstream 255972 13914084 ~ 13917087 (+) False LOC111195567
XM_007254751.3 mRNA upstream 185585 13463299 ~ 13468103 (+) True LOC103042421
XM_007254733.3 mRNA upstream 190452 13454703 ~ 13463236 (+) True LOC103036495
XM_007254732.3 mRNA upstream 206465 13439492 ~ 13447223 (+) True LOC103036187
XM_022683075.1 mRNA upstream 333997 13301895 ~ 13319691 (+) True LOC103042102
XM_007254725.3 mRNA upstream 354809 13289714 ~ 13298879 (+) True chtop
XM_022683083.1 mRNA downstream 1775 13659887 ~ 13666328 (+) True LOC103043039
XM_022683084.1 mRNA downstream 1775 13659887 ~ 13666328 (+) False LOC103043039
XM_007254742.3 mRNA downstream 12231 13670343 ~ 13794112 (+) True LOC103039331
XM_015607225.2 mRNA downstream 14160 13672272 ~ 13725147 (+) False LOC103039331
XM_022683430.1 mRNA downstream 244655 13902767 ~ 13905038 (+) True LOC103030231
TU267853 other upstream 291030 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 689344 12956860 ~ 12964344 (+) False s100a14
TU267630 other upstream 725164 12889358 ~ 12928524 (+) True LOC103029421
TU267531 other upstream 879192 12715368 ~ 12774496 (+) True G197106
TU267214 other upstream 2236100 11402194 ~ 11417588 (+) False mrpl24
TU268310 other downstream 808307 14466419 ~ 14468882 (+) False tac1
TU268380 other downstream 1136308 14794420 ~ 14796728 (+) True G197665
TU268755 other downstream 2663891 16322003 ~ 16328158 (+) False ppp1r11
XR_002651696.1 other downstream 2687005 16345117 ~ 16359668 (+) True atat1
XR_002651698.1 other downstream 2766821 16424933 ~ 16430534 (+) True LOC111195522

Expression Profile