RNA id: XM_022683098.1


Basic Information

Item Value
RNA id XM_022683098.1
length 8511
RNA type mRNA
GC content 0.49
exon number 16
gene id LOC103030137
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15761923 ~ 15789854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGCGCTACAGCCCTCAGTAGCCGTTGACGGCTCTAGTAGAGACGGACTGAAACCGTACTTctatatcatatttttattttccccttttttcatttattttgtggaaaaaaggaaaaggagtACCAATCTCAGGGCTCACCATACTCAATGAGCGTACAGCGCAATGTCAGAGCGCTCTGGGCAAACAGCAAAGGGGAAGGATGGCAAAACCAAGTATGCGTCTCTCAACCTGTTTGATACTTACAAAGGAAAGAGCCTTGAAGCACAGAAGCCTGTTGTTGCCCCTCGTCATGGCTTGCAGTCTCTTGGTAAAGTTGCTTCAGCACGGCGCATGCCCCCCCCAGCCAACCTGCCCAGTCTAAAGGCAGAGAACAAAGGCAACGACCCCAACGTCACGCTCGTTCCCAAAGACGGCACAGGATGGGCAAGCAAGCAGGAGTCAGCAGACCCAAAGAGTACCGATGTATCGTCTTCACCGCAGCCGGAGTTGCAGCAGCCTACGGCTTCACAGACACCTGCACCGAGCCTGCCGAGAACACCTCCAGCTCAAGAGgCCCAAGCTCAAACTACAGCTCAAGCCGCAGGGACAAGGTCTTGGGCTCAGGCCAGTGTTACACATGGAACACAAGGAGATGGTGGAAAGGGATCAAACCAACAGTCGCCATTCTCTCGCGAGGAATTTCCCACCCTGCAGGCGGCGGGCGACCAGGACAAAGCTGGCAAAGAACAGGCCACTGCAGATCAGTGGTATGGGCCAGGACCAAGCCTCCGCCCCCAGAatgTGACAAGTTGGCGGGATGGTGGGGGCCGTGCAATGGCACCCACCATAACAGGGGAGGGGGTAATGGAGGGCGGTGTTGGGGGAGCAATAGTAATGGAGGGTGCTGCTGGGGCCCCTCCTCTCCAGCAGAATCCGCCCTCCCTTGGGCTGCCTAGAAACCCTCCTGCCGGCAGCCCCACCCTTCCCCTCCCCCAGCCTCCTGTTGGACCGCAGTTCCCTGCTTACAGAGGAATCATGCCTCCCTTTATGTACCCACCGTACCTGCCCTTCCCACCACCTTATGGTCCACAGGGACCATATAGGTTTCCACCACCAAATGAGGCTGCTAGatTTCCTCGCACACAGGGGGGTGCTGGACCAGAAGGGAGGCCCCCAGGGGGTCCTCGTGGCGAGGTGGTCAGACGCCCTTCCATCCTGAAACAGGATGACCTCAAGGAACTGGATGAGCTAGATCATGATGGAGATGAAGGGTGGGCTGGGGCACAAGAGGAGATTGACTACTCTGCCAAATTGAAGTTCAGTGATGATGAAGGAGAGGATGACGGAGATGAAGAGAAGGCTGAAGGCCAGAATGGAACAcgGGAGCAGCAGAAATCCCAAGACGGACCTGCTCCAACTATACGTTCTCGAACATCTGACAGTGGAGGGGAAATGCGCACTCCTCCTTCTGTTACTGAAGACCCCTCACCAACACCCTCCAGCAAGCCAGGTTGGGCCGAGGAGGGAGAAAATGGCAGGAGTGGTCAGACAAACACGGGGCCCTACCAGGACCGACCCCCAAACCAGACAGCCTCCCAGAAGCCGCCTGAGGCACAGGCAGGTTCTCCTGCACCGCCGCCCCCTAGAGCCCTGCTTCCCCAGCAGCAGGGCGAAGACGAAGATGAGACGTGGCGTCAGAGGAGGAAGCAGTCATCATCAGAGATTTCTGCAGCAGTAGAGCGTGCCCGGCGTCGACGGGAAGAGGAGGAACGTAGAATGGAAGAAGAAAGGCGTGCTGCATGTGCAGAGAAGCTGAAGAGGCTAGATGagaaacagcaacagcagcaacatcaacagcagcagcaacagagcATCAAGCCCCCTGCTGCAGGTGAAGTTACTCCAAGCAGCCCTAGCCCTTCCTTGCCAGCATCAGTTTCCTCCTCCAGTGCAAGTCAGCCCCCATCACCTTGCGTGGACATAGAGGAGCCTCCTCTTGCAGCTGCTCCGACAGCTCAGACAGTTAGCACTACAGTGGGGCtaagtgctaatgctaatagcaGGCAAAGAGCTGGCAGCAACAGCAGCTATGACTCAAGCTCAGAGTCCCCGCAAGTTGCTCAGCCTCCTGCTCCCCAACTTCAGCAACCCATTGATGTCACGGGACCAGTGGAAAGCAAAGAGGAGCCCATCATAAGTAGTGCACACATTCGGAGCAACAGAAGTGGAGATGAATCTGTGAAAATGGAAGGAGTTTCTGTAGGAGCAGGAAGACAGGGGAGTGGAATGCCTGGCCAGGGCTTTTCCAAATACCAAAAGTCCCTGCCACCTCGTTTTCAAAGGCAACAGCAGGAGCAGCTTctcaagcagcagcagcagtggcagcagcagcagcaacagcaacatAGCCAAGCAGCCCAAGCCCAGCTTCAGTCCCAGCCAAATCAGCAGGGTCCCTCTCCCGGTGCCACACCGCAGTCAGGCCCTAAACAACCTGCTCTCTACCCTCCTGGCTCCATGGGTCGCCCACCCCCTCTGCCCATGAATTTTGACCCTCGTTGGATGATGATGCCCTACATGGACCCCCGGATGATGCAGGGTCATCCTCCTCCCATGGACTACTAccctcccagcatgcacccctCTGGTCTGATTAATCGGGAGCGCTCAGATTCTGGTGGTTCTGGATCGGATCCCTTTGATAGGCAGCAGCATGGAGGCCCCCCTCATCCCCATCGTGGTACACCCCCAATGGATCCTAAACTTCCCTGGGGGGCAGATGTCTTTCCAAGTGGCAATGAGGGTCGCCCTCTGAGCTCTCCGCTAAGGCAGAAACAAACTCTGGAAGAAGACGACATTGGTAAAGGCTCAAGGTCTGACACTCCTCCAGTGCGTATGCGGGAAGGTGCTACAGGCCCAATTCAGCCACCTGTTGTGACCCCTAATTCTACTTCTGGTTCTTCTGATCAAACTACAGCACCTATAGCAACTCAAGTTGGTTGCCAGGGAGGCGGCCATCACCAGCCCTTCTTGTCAGCACGAGCAAATTACAACAGCTTTGCTGATAATGGATCCAGAATGGCTGCTCACTCCCAACAAAGAGGAAACAGTGCTGGTGAGCTTCGTGGATTTGGCCATCAGGAAGAAGGCCCACAGGGCAGCCAGCAGAATCAAATCTGGGGAGCTCCACATGCTCACTTTGACCGCAATGGTCGTGCTGATCCCTCTTCCTTGGAGAACAACCCTCATTTACAgcaccaccatgcccatcactCTCATccttctcatttctctcttcaTCCTCACAAACGAGAAAATggcagagagcgagagagaggagcagagcCCAAAAAGAGCGAAACCACACCCCCACTTCACCAGCCGTCCCTTTCCTCTTCttgctcttcctcttcttcttcctcttcagcGAGGGAGGATGGCAGTGGAAAGCAGTCACTGCACCATCCCCACCCACACCCCCACCATGAGCATGACACTGGGCATGTAAATGTCAGTGGCCGCAAACAAGACAAAACAGGAAGTgcgtacactcacacacagtccTCCCAGCATTCTGTGCAGCAGCACCACCCGAAATCTAACTTGCGTGGTCGGGAGCAAAAGACTGAGACTCAGTGGGGTCCGAGGCCTGGAAGCAGCAATGTGAGTGGTGGTCCTACACATAACAGAAAGGCAGGTACTGGACACACAGTAGCAGATGATTCCATCAATCAGATTGATAAGCCTGCTGTTCAGTCAGGAAGTGGTAACCCCAACAAGCGGGCGGGTCCTATTAAGCGGCCTGTGCTGAAGGAAATGAAGAGGGAGGGTGGTGAAGGTGAAGGAGGAGAGAAGAACACTGGAGGCTCTGGGAAAGATAAAGAGCAAGATACCAATCAGGCATCTGTCAAGCAAGAGTTATCTTCTGGTCCTCAGTCCACGTCTGGACCCTCTGGAAAAGATGAACCCACTTTGTCTGGAAAACCAAGGAATGGTGAAAAAGATCGAAGTTCAGGTGGGAGACCAAGTAAAGGACCCAAAGAAGGAGACCTCTCTGTCCAAGCTGCTGGCTGTCCAGCACCACTGTCGAGAAGGGACCGTGAGCGTTCATATGAAAGGAGTGGCAGTGGAGGGGGTGCTAATTACCATGCAGGCTCTTCTCGAGGCAATCGTGCGAACCGTGGAAGAGGGGAGTTCTATGGTCGGGGCAGAGGCTACAGGGGCACCTACACAGGCAGTGCACGTGGCAGGGCAGGGGGCAGAAGCAGCAGAGACTACAGGTCAACTGCTAACAGTGGCTATCAGCATGGCCCCTCCAACCAAGATTACAAGAGGGAAGTCTCATCTGGCAGACATGGCCAGGGGGGCTCTCAGCCAAATCCCGGGCGTGCCAGGAACCACAGCGAGACCCGAAGTGAGGGATCAGAATATGAAGAGGTGCCGAAAAGGCGAAGACAGAGGGGGTCTGAAACGGGCAGCGAGAGTGCTGCTAGTGACCTTGCTCACTCTGATAAGGAAGATCGCAAGGCAAACCCTAAGAAAGGAGCTATAGGAGAGAACCCAGTAATAGCCAATTCATCCAACTCTGTCCCTCCTAGAAACACCCAAGCCAGAGTGTTCACACCTAGGGGAGTGCCTTCTAGACGTGGCAGAGGTGGAGGTGGCGCTGGGGGAAATGTCTACAGAAGTGcaggtggtggaggaggagtttctggaggGCACCGTGGTGGACCTGGCTCTTCTCAAGGTTTGTCATCTAAATCCTCAGCATCGATGAGAAAGCAACACACACCTTCGCAGCCCTCCCCACCAAAAGAAGTTAGTCGTGGACCCATTGGTGAAAAGAAGGAGAAGGCTGCAGATCAGAGCCAGGCTCACAATCTGGGCGTAAACTCTTTGGTACCTTCTACTCCCTCTGTACCCACAACTGCCCAACAAGGCACTGAAAATGGTGGTATTGCACAGCTGCCCACAGTCCACAACACTTCCAATTCCACTGGTCCCACAAACAAACCGGTCCCTCTGCCTAATGCAGATGGGCGGAGTTTCCCTAACAGAGGTTTCGACCGCCCCCCTCGTCGAAGGCGCCATGGACGCTCTCAGCATCAACAAGACAAGCCCCCCAGGTTCCGACGATTGAAGCAGGAACGAGAGAATGCAGCCCGCATTAATGGAAGCAGTGGAATCATTGAAATTGTAGGTGGGCAACAGCAGAGGTCTGCTTCGCCGTCCCAGAATTCCATGCAGGAAACAGACGGCACATCCCATGTACCCACTACCGCCACTGTTGTTCCAAATACAAACAACGTTACAGCTACTaccaataacaacaacaacatcagCCACCATGGAAGCGCAAATGTGAATCTCAATagccatcaccatcaccaccatcactacCATGGCAACTCCAGCCTATCCCACGTTCAGCACCACCACAATCACAACCCAGTCAGCGGTGCAAAGTCTCCTGATGTCTCTAATCAGAACTCTGACCAGGCCAATGAGGAGTGGGAGACTGCCTCAGAAAGCAGTGACTTCACTGAGTTtcgagagagggagggaggtggtggtggtggcggtggcggaggaggaggaggagggggaggagtcggaggaggtggaggtggtggcAGCGGcagtggaggaggtggaggaggaggagttggAGGTAACAGTGGAAAATCCTACTCCTcctatcaccaccaccatcatccttCAGGcagaggaggtggaggtggggagagagagatgactACTAAAGAATCGGCCGCCAACAAGAGGAGCTTTTCCAGCCAGCGACCTGGAATGGAGAGGCAGAATAGAAGGGTCAGTGGTGGTGGAGGCAGAGGCTCCAGAGGCCCACCAAGCAGTGGGGGTGGGCCAGGAGGTGTAGCTGGTAATGGTGGGGCCAATCGTGGTGAGAGGCGTGGCAACTGGCCATCTCCCAAGAACAGGAAGTGAATCCCTTACCCTTCTAATTTGGAAACATTTCAGAAGAATCCCTCTTTTTCTGCCCACTCATCTCTCAGTTCTCCTCCCCTAACATGTTACCttataattatcattattattattattattattattattattattattgtacaaGATAGTTATGAAGATGGTGTACACACTCATTCTAGCTCCCTTGGTTTATTGCTTTTGTCCCTTGTCCCTTTTTGTCCACACACACCTTTTGTTTCCGTTCATGCACCCACAGACCCCAAGTTCTACTCAGATTAGATCTACCTGACCCCATTTTAGATGCAAGTATATCTTGACTGAAACAAACATTCATATATACAAAACTCATACATGTTTGCATATACAAGCACAAAAAGGCATCAAGCTGGCACAACAGACACATCCATGTGATTTCAGTGTGGGGCAGTCATGCATCCGTAGCAGAATTGATTGAGTCGTACACGATGTTTATATAATGTCCTGTGTATTTAAACAACAATGGGCGGTTTAGCTTGTGTATTAAGCGAAGcatttctgtatattcttcaGGTTGGGGCAGGGACATGGAGGTGCTTTTTTAACAAGAACGGATGTACCATTTTTCCCTACTTTTGTGTTAATACTTTCCTTTTACCTCATCGTTCAGTTTACGTTTCAAAACCCCCTCCCTTAAGAAGTTAGGGTTGTAGTATGTTGTCCTCTGCAAAGCAGGtcattaaatgcatttttatacaCACCCTTCTTgatctttttcagtttttttaatttatcacTAATTTGTGTTTGCCCAATCCATGAAATACTAATGTTCACATTTTTCTGTTTCTAAGATCACTGTTGTAGCTGCTTGTTCAGAACTCTGTAGtgaccttttttgttttgtttcaacCAAGGTTGTTGTCAACCAATCTTCTGTCTTTTTGTGTTTTCCTGTAGCCTTTTGGCCTCTGTAAAAATTTAGTTTCATTTGCTGAAATAATTTGTTCTAGAAAAACTCCTGCGTGTTCTAAGAAGACTgaatttctttgctttattgAATCTCCCTGGCTTTTTCTACTGAGGATTTGcggttttatcattttaatattaattatttgaaaactcctgaaagcaaataaaaatgaacatacatatacagtactcCTCATTTAAAGCCACTATCCAGACTGCTTTCTTATGTATGCAAGTAAACTCCTAGACACTCCTAGAGTCTTTACCATCTACTTATTAGATGTCATTCAACCGTTCCCTTTTTAATCTACATGCACAGTAAATGTTGTGCCATTGATGCGTTTTCTCACTGGTTGTAGGTCATTTAGAGAGGTTCTCTGTTTAATCACCTTCCATTCATTACGGCAACAAACTATGACTGAATGACAGACGTTTCTCAAGTACTTATTTAAGATATTCAAGTCTTTGCCAAGGAGTCAGTCCCCCTCTTGGGGTAGTGTTACAAAATGCAGTTAGTATTCCTACACTGTAGTAAGAGTGATGTGTACCCACTTTTAATGGACTGTGGTGCACACTCTGTTGGCAAAGGTGTGTAGGTTCTGGTTTGAAAAGTTAAATGAAAAGATTATATTGAATAACacctgaactaaaaaaaaaaactttccctTTGTGTTCTGACCAGCATCTGTATTTTTACTGCTGTAAGTTGGGGTTTGTTTTTTGGGAATGCCTTTATCAGACAATAGCTTTGGGATATTGAGTAGGGCTTCTAAAAAGAAATGTTGTATGAGTGATTTGGGGATTTGAAGTACATGTGTGAATTCTCTCTACTGTATGTGTAATGTTCTTTATTTTGAGGGGAGGGGTGTTGAAAGCCGAAACGATTGCCctgtttggcttttttttttcctttctttctttgtggACAATGCTAGGATGTTTTTACCGTGTACTTATATACATCCACGGATATGCATtcaagtgtgtgtatgtttatccAAATGAAGTACTTGCAGTGAGAATCATTAAAAACCCCCTCCCCCAATACTACGGAAAAGAAATGCagtgggtatatatatatatatatattttttttttcctcttatctTATTCACCCCCtttccaccccccccccccacactgaCATTTTACCAAGCATGAAAACATCCTCAGCTAAAGCTCGCTCGGTGAGCCTAGCCATCGGCAGCCATATACTCCCATAGGCTCTCAGTGCGACCCCCTCATCCCTTCTTAACTCTTAGCTATCTATTGATGTGGTCATATTGTATGTAcccatgtttaataaataaataaataaataagcattaaAGTGTATTCCTGGAATACTCAAAAGATTGTACTATACTTTCAACTTTACCAAGGTACCTGAAGTGGTTACAGCTGTTATAGCATTTATGGTTTATTATTGGAGCCTTGATATACACACATGTATGTATATTGGTATGTATCTAAGTTTGTCTACCCCAACTTACATTCCCACAAACAAATGTTGCCATTTTTAAGTTCAAGGGAGCAATGTACAAGCAGAGAAGTGTcttattataataaagtatacagagagaaaagttaaataaaatcttttGTTTTAATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268494 lncRNA upstream 368245 15388554 ~ 15393678 (+) True G197747
TU268453 lncRNA upstream 406686 15299612 ~ 15355237 (+) True G197716
TU268377 lncRNA upstream 970713 14789870 ~ 14791210 (+) True G197663
TU268373 lncRNA upstream 976183 14785121 ~ 14785740 (+) True G197662
TU268334 lncRNA upstream 988461 14771795 ~ 14773462 (+) True G197639
TU268662 lncRNA downstream 31624 15821478 ~ 15842757 (+) True G197848
TU268695 lncRNA downstream 355657 16145511 ~ 16146073 (+) True G197879
TU268704 lncRNA downstream 356631 16146485 ~ 16148110 (+) True G197881
TU268706 lncRNA downstream 356631 16146485 ~ 16148110 (+) False G197881
TU268707 lncRNA downstream 356631 16146485 ~ 16148110 (+) False G197881
XM_007228532.2 mRNA upstream 8983 15748550 ~ 15752940 (+) True LOC103030882
XM_022683104.1 mRNA upstream 14878 15736537 ~ 15747045 (+) True neu1
XM_007228526.3 mRNA upstream 52472 15699725 ~ 15709451 (+) True prrt1
XM_022683101.1 mRNA upstream 66424 15666638 ~ 15695499 (+) True skiv2l
XM_007228536.3 mRNA downstream 2915 15792769 ~ 15800233 (+) True csnk2b
XM_022683107.1 mRNA downstream 6114 15795968 ~ 15800233 (+) False csnk2b
XM_015602024.2 mRNA downstream 67262 15857116 ~ 15859664 (+) True LOC103032568
XM_007231723.2 mRNA downstream 439653 16229507 ~ 16254632 (+) True LOC103042292
XM_007231718.3 mRNA downstream 532088 16321942 ~ 16330240 (+) True ppp1r11
TU268380 other upstream 965195 14794420 ~ 14796728 (+) True G197665
TU268310 other upstream 1293041 14466419 ~ 14468882 (+) False tac1
TU267853 other upstream 2399265 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 2797579 12956860 ~ 12964344 (+) False s100a14
TU267630 other upstream 2833399 12889358 ~ 12928524 (+) True LOC103029421
TU268755 other downstream 532149 16322003 ~ 16328158 (+) False ppp1r11
XR_002651696.1 other downstream 555263 16345117 ~ 16359668 (+) True atat1
XR_002651698.1 other downstream 635079 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other downstream 635079 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other downstream 635079 16424933 ~ 16430534 (+) False LOC111195522

Expression Profile