RNA id: TU268767


Basic Information

Item Value
RNA id TU268767
length 250
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G197925
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16343664 ~ 16343913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACGGAAGCTCGGtgtacatttaatttatgattaaagCTCTTCGGgcgttttctgtgttttttgtatgttaaGCTGGAGCGGTGGAGCTGCTTTATTAAACGTGTTCGATGCTTTAGCTCCGTTAACGTGGACCTGGGTGAACTGCTGCAGCCTGAGGAAATCCTATAAGCGCCTTGTGTTGTGGCGCTAATCCTGAATCGCGCTGTTTGAAGGGAGtgacagtagcagcagcagcagcagcagcagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268766 lncRNA upstream 2309 16339690 ~ 16341355 (+) True G197924
TU268728 lncRNA upstream 29412 16240590 ~ 16314252 (+) True G197892
TU268739 lncRNA upstream 115446 16226567 ~ 16228218 (+) True G197903
TU268699 lncRNA upstream 144178 16188912 ~ 16199486 (+) True G197880
TU268710 lncRNA upstream 195554 16146485 ~ 16148110 (+) False G197881
TU268908 lncRNA downstream 44984 16388897 ~ 16393498 (+) True c23h5orf49
TU268925 lncRNA downstream 106460 16450373 ~ 16465970 (+) True G198043
TU268928 lncRNA downstream 141116 16485029 ~ 16489049 (+) True G198045
TU268933 lncRNA downstream 180756 16524669 ~ 16525372 (+) True G198050
TU268934 lncRNA downstream 181914 16525827 ~ 16526640 (+) True G198051
XM_007231718.3 mRNA upstream 13424 16321942 ~ 16330240 (+) True ppp1r11
XM_007231723.2 mRNA upstream 89032 16229507 ~ 16254632 (+) True LOC103042292
XM_015602024.2 mRNA upstream 484000 15857116 ~ 15859664 (+) True LOC103032568
XM_007228536.3 mRNA upstream 543431 15792769 ~ 15800233 (+) True csnk2b
XM_022683115.1 mRNA downstream 1204 16345117 ~ 16359668 (+) False atat1
XM_022683118.1 mRNA downstream 1204 16345117 ~ 16359668 (+) False atat1
XM_022683114.1 mRNA downstream 1204 16345117 ~ 16359668 (+) False atat1
XM_022683117.1 mRNA downstream 1204 16345117 ~ 16359668 (+) False atat1
XM_022683116.1 mRNA downstream 1204 16345117 ~ 16359668 (+) False atat1
TU268755 other upstream 15506 16322003 ~ 16328158 (+) False ppp1r11
TU268380 other upstream 1546936 14794420 ~ 14796728 (+) True G197665
TU268310 other upstream 1874782 14466419 ~ 14468882 (+) False tac1
TU267853 other upstream 2981006 13324386 ~ 13362658 (+) True G197334
TU267673 other upstream 3379320 12956860 ~ 12964344 (+) False s100a14
XR_002651696.1 other downstream 1204 16345117 ~ 16359668 (+) True atat1
XR_002651698.1 other downstream 81020 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other downstream 81020 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other downstream 81020 16424933 ~ 16430534 (+) False LOC111195522
TU269304 other downstream 2040714 18384627 ~ 18385072 (+) True G198344

Expression Profile