RNA id: XM_007231715.3


Basic Information

Item Value
RNA id XM_007231715.3
length 614
RNA type mRNA
GC content 0.47
exon number 3
gene id c23h5orf49
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16388808 ~ 16393498 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCCGTATCCCAGCAACCGCGGCCGGCAGGTCTACATTAGCGCGATTTTTGAGCGGATCAATGTTAAAAATTAAACGGTAAAAATGGACGTGTTTTCTGAAGCGCAgcgcagaccgctctccacacTGTCTGTGTTCAGCTTTATACCACCCAGGAGAAACGAACCCAGAGAGAGGAGATACTTCTACTGCAGTCCTCAGGCTCCAGAAGTGTACTTGTATGACTGCACACATCGACGGGCTGAAGGTTATGATAACAAGTTGCACCGAGATGATCGCCAACATGCCAAGGGTCATGGGCTAGACATTTTCAGTGAGGAATCATCAAGACCCATTCCTGTGCGCTCTTCATCTGACTACGGGAGAAGACTCCTGCCACCTCTGTACAAACCGGGCCGCCAGTTCGTCCGAGTTGCTCACATACGCTCAGAGTTTTACAGGAAAAACGGGATTACAAAAACACTGGAGGAGGGGTATGGGCCTGTTGTTCCAGTTTGAGACGTTTGCCTGTAAGATgtgcaatatattaaataagcaaAACTGATGTCTCTGCATAATAAACTTACAGCgagaaatctaaataaaaacaaccacAGCAGAACTTCAGTACATCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268767 lncRNA upstream 44895 16343664 ~ 16343913 (+) True G197925
TU268766 lncRNA upstream 47453 16339690 ~ 16341355 (+) True G197924
TU268728 lncRNA upstream 74556 16240590 ~ 16314252 (+) True G197892
TU268739 lncRNA upstream 160590 16226567 ~ 16228218 (+) True G197903
TU268699 lncRNA upstream 189322 16188912 ~ 16199486 (+) True G197880
TU268925 lncRNA downstream 57714 16450373 ~ 16465970 (+) True G198043
TU268928 lncRNA downstream 92370 16485029 ~ 16489049 (+) True G198045
TU268933 lncRNA downstream 132010 16524669 ~ 16525372 (+) True G198050
TU268934 lncRNA downstream 133168 16525827 ~ 16526640 (+) True G198051
TU268936 lncRNA downstream 155240 16547899 ~ 16549313 (+) True G198053
XM_022683115.1 mRNA upstream 29140 16345117 ~ 16359668 (+) False atat1
XM_022683118.1 mRNA upstream 29140 16345117 ~ 16359668 (+) False atat1
XM_022683114.1 mRNA upstream 29140 16345117 ~ 16359668 (+) False atat1
XM_022683117.1 mRNA upstream 29140 16345117 ~ 16359668 (+) False atat1
XM_022683116.1 mRNA upstream 29140 16345117 ~ 16359668 (+) False atat1
XM_022683121.1 mRNA downstream 31958 16424617 ~ 16430534 (+) False LOC111195522
XM_022683122.1 mRNA downstream 31958 16424617 ~ 16430534 (+) False LOC111195522
XM_022683125.1 mRNA downstream 31958 16424617 ~ 16430534 (+) False LOC111195522
XM_022683123.1 mRNA downstream 31958 16424617 ~ 16430534 (+) False LOC111195522
XM_022683124.1 mRNA downstream 31958 16424617 ~ 16430534 (+) False LOC111195522
XR_002651696.1 other upstream 29140 16345117 ~ 16359668 (+) True atat1
TU268755 other upstream 60650 16322003 ~ 16328158 (+) False ppp1r11
TU268380 other upstream 1592080 14794420 ~ 14796728 (+) True G197665
TU268310 other upstream 1919926 14466419 ~ 14468882 (+) False tac1
TU267853 other upstream 3026150 13324386 ~ 13362658 (+) True G197334
XR_002651698.1 other downstream 32274 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other downstream 32274 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other downstream 32274 16424933 ~ 16430534 (+) False LOC111195522
TU269304 other downstream 1991968 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 2465873 18858532 ~ 18863222 (+) False G198397

Expression Profile