RNA id: TU268928


Basic Information

Item Value
RNA id TU268928
length 520
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G198045
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16485029 ~ 16489049 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGTGACGCCAGGTAgagaggagtgacgcgagccgagttaaaaatacagacaggtttattagcaggaagGCTAACAGGTTCTGCTAACAGAATAACCAAGTAAACAATGATCTCACCGATAACCAGagacgtagtcaaaaatacagtccgagttcgaaaccgagaaacagtccaaccatacaacaaatccaataagggcaaaacaaaagacataaaccgataatccgaaaacagggtcgtaacgagaaggcaaaaacagtAATCAGGAAAACGCTTAGTACGCAACATAAGTCGgcaatacctcgcggtgtttgtttacaaacggatgccttaaatacaggatctagataagaatgaaccggaagtaatttagtacacaggtgaatcagagcgtcggagcgtaacgtgattgggtgaaggtgaagggttattattgatgtcataatcaggggaattctgggaaatagagtccggtagtgtggaaggagaaccaGGCTGCGTAACAATATATTATTTATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268925 lncRNA upstream 19059 16450373 ~ 16465970 (+) True G198043
TU268908 lncRNA upstream 91531 16388897 ~ 16393498 (+) True c23h5orf49
TU268767 lncRNA upstream 141116 16343664 ~ 16343913 (+) True G197925
TU268766 lncRNA upstream 143674 16339690 ~ 16341355 (+) True G197924
TU268728 lncRNA upstream 170777 16240590 ~ 16314252 (+) True G197892
TU268933 lncRNA downstream 35620 16524669 ~ 16525372 (+) True G198050
TU268934 lncRNA downstream 36778 16525827 ~ 16526640 (+) True G198051
TU268936 lncRNA downstream 58850 16547899 ~ 16549313 (+) True G198053
TU268937 lncRNA downstream 58850 16547899 ~ 16565823 (+) False G198053
TU268994 lncRNA downstream 184031 16673080 ~ 16677784 (+) True G198092
XM_022683121.1 mRNA upstream 54495 16424617 ~ 16430534 (+) False LOC111195522
XM_007231711.3 mRNA downstream 110238 16599287 ~ 16633452 (+) True nsun2
XM_007231709.3 mRNA downstream 206547 16695596 ~ 16701247 (+) True med10
XM_022683130.1 mRNA downstream 805842 17294891 ~ 17829877 (+) True adgrb2
XM_022683133.1 mRNA downstream 1445644 17934693 ~ 18062867 (+) True col16a1
XM_022683134.1 mRNA downstream 1445644 17934693 ~ 18062867 (+) False col16a1
XR_002651698.1 other upstream 54495 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other upstream 54495 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other upstream 54495 16424933 ~ 16430534 (+) False LOC111195522
XR_002651696.1 other upstream 125361 16345117 ~ 16359668 (+) True atat1
TU268755 other upstream 156871 16322003 ~ 16328158 (+) False ppp1r11
TU269304 other downstream 1895578 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 2369483 18858532 ~ 18863222 (+) False G198397
TU269381 other downstream 2369483 18858532 ~ 18863222 (+) False G198397
TU269386 other downstream 2369483 18858532 ~ 18863222 (+) False G198397
TU269387 other downstream 2369483 18858532 ~ 18863222 (+) False G198397

Expression Profile