RNA id: TU268933


Basic Information

Item Value
RNA id TU268933
length 704
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G198050
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16524669 ~ 16525372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caaaaaaagaattttgaatgtaggtcttatggtttttgagttattgagaaaattgtgaaaaatgaatttccttgtttatagcgccaccacttgaccaatcggtgccatttttgttgtccaccgagatgcactgatcctacatctacctaccaagtttcatttctctatgacttacggtttaggctgcacaactgtttttacaggagaaaaagaataataataataaatatagccgcaagcggcgattTACGGGGTTCGAGCGTTACAGGCAAAGAGACCCCTGGAGGCCAGTTAGGCTTAAAACATGTTGCCGGTTGACCGGCATCGCCAAACTGGatgaggatgaccagcatgaccgtcGAAGACCAGAGCTAGATTACCAGCATGACTAATCTGGATGACAAACTTGTTGACCATATTGACCAAGCTggaggaccataatgaccaaactggatgaccagcatggcaaaggtggttggccagtatgaccaagctggaagaccaccattactatgaggacaaagctgaatgaccagcaggaccataatgaccaatgtgaatggccagcatgaccaagctggatggccagcataaccaagctgggtgaccagcgtgaccataaagaccataatgGCAATGCTAGATGAGTGGTGTGAGTAAACTAGTTGAAAAGCATTGATAAATTGAGCTGTAGTGTTCATCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268928 lncRNA upstream 35620 16485029 ~ 16489049 (+) True G198045
TU268925 lncRNA upstream 58699 16450373 ~ 16465970 (+) True G198043
TU268908 lncRNA upstream 131171 16388897 ~ 16393498 (+) True c23h5orf49
TU268767 lncRNA upstream 180756 16343664 ~ 16343913 (+) True G197925
TU268766 lncRNA upstream 183314 16339690 ~ 16341355 (+) True G197924
TU268934 lncRNA downstream 455 16525827 ~ 16526640 (+) True G198051
TU268936 lncRNA downstream 22527 16547899 ~ 16549313 (+) True G198053
TU268937 lncRNA downstream 22527 16547899 ~ 16565823 (+) False G198053
TU268994 lncRNA downstream 147708 16673080 ~ 16677784 (+) True G198092
TU269080 lncRNA downstream 621608 17146980 ~ 17147227 (+) True G198163
XM_022683121.1 mRNA upstream 94135 16424617 ~ 16430534 (+) False LOC111195522
XM_007231711.3 mRNA downstream 73915 16599287 ~ 16633452 (+) True nsun2
XM_007231709.3 mRNA downstream 170224 16695596 ~ 16701247 (+) True med10
XM_022683130.1 mRNA downstream 769519 17294891 ~ 17829877 (+) True adgrb2
XM_022683133.1 mRNA downstream 1409321 17934693 ~ 18062867 (+) True col16a1
XM_022683134.1 mRNA downstream 1409321 17934693 ~ 18062867 (+) False col16a1
XR_002651698.1 other upstream 94135 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other upstream 94135 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other upstream 94135 16424933 ~ 16430534 (+) False LOC111195522
XR_002651696.1 other upstream 165001 16345117 ~ 16359668 (+) True atat1
TU268755 other upstream 196511 16322003 ~ 16328158 (+) False ppp1r11
TU269304 other downstream 1859255 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 2333160 18858532 ~ 18863222 (+) False G198397
TU269381 other downstream 2333160 18858532 ~ 18863222 (+) False G198397
TU269386 other downstream 2333160 18858532 ~ 18863222 (+) False G198397
TU269387 other downstream 2333160 18858532 ~ 18863222 (+) False G198397

Expression Profile