RNA id: TU268937


Basic Information

Item Value
RNA id TU268937
length 565
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G198053
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16547899 ~ 16565823 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGAGGGCTTTCTGTATCGAGACTGACGAGTTCAGGAGTGCTTTTGGCCACTGCAAAATTACAGACgtcagcaaaaaaaagaaaaaaagaaaaaggtacATTTAAAATCGGTCACTGACATCAAACAGGGAGAGTCACACTGGAGATAACAGTACGCGGCCGCCGAGGCGAAACCCACGATccaacaccaacacacaccagccAGTCTGTGTGTCTGATAAAGAGCTGGTAGATAGAACAAGCGTAATAAAGAAGCAGCTCAGTGTTGGAACACTGGCAAAGATGCTGGATCTACCTAAAAGCAGATTCTGCAGGTATGCTTCTATTTGCCATATTGCATTGATAGGCGGGAAAGTCGGGTTAAAAGGACACTCCTGCTGTTAGACtcggtgtgtgtggtgtaaagTCTCTGTGTGACGGGTATGACCTCGTAAAAGCACTTCACAGACACGTTTTTGTGACAGCAAAAGTCATTCCATACAGAGGAGGCATCCagattctgcttttttttggcAGTTGCCACAAACATGGTTACagcgagagatagagagagagagagagaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268934 lncRNA upstream 21259 16525827 ~ 16526640 (+) True G198051
TU268933 lncRNA upstream 22527 16524669 ~ 16525372 (+) True G198050
TU268928 lncRNA upstream 58850 16485029 ~ 16489049 (+) True G198045
TU268925 lncRNA upstream 81929 16450373 ~ 16465970 (+) True G198043
TU268908 lncRNA upstream 154401 16388897 ~ 16393498 (+) True c23h5orf49
TU268994 lncRNA downstream 107257 16673080 ~ 16677784 (+) True G198092
TU269080 lncRNA downstream 581157 17146980 ~ 17147227 (+) True G198163
TU269102 lncRNA downstream 668053 17233876 ~ 17241559 (+) True G198173
TU269096 lncRNA downstream 693377 17259200 ~ 17264139 (+) True G198172
TU269236 lncRNA downstream 1550891 18116714 ~ 18117099 (+) True G198283
XM_022683121.1 mRNA upstream 117365 16424617 ~ 16430534 (+) False LOC111195522
XM_007231711.3 mRNA downstream 33464 16599287 ~ 16633452 (+) True nsun2
XM_007231709.3 mRNA downstream 129773 16695596 ~ 16701247 (+) True med10
XM_022683130.1 mRNA downstream 729068 17294891 ~ 17829877 (+) True adgrb2
XM_022683133.1 mRNA downstream 1368870 17934693 ~ 18062867 (+) True col16a1
XM_022683134.1 mRNA downstream 1368870 17934693 ~ 18062867 (+) False col16a1
XR_002651698.1 other upstream 117365 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other upstream 117365 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other upstream 117365 16424933 ~ 16430534 (+) False LOC111195522
XR_002651696.1 other upstream 188231 16345117 ~ 16359668 (+) True atat1
TU268755 other upstream 219741 16322003 ~ 16328158 (+) False ppp1r11
TU269304 other downstream 1818804 18384627 ~ 18385072 (+) True G198344
TU269373 other downstream 2292709 18858532 ~ 18863222 (+) False G198397
TU269381 other downstream 2292709 18858532 ~ 18863222 (+) False G198397
TU269386 other downstream 2292709 18858532 ~ 18863222 (+) False G198397
TU269387 other downstream 2292709 18858532 ~ 18863222 (+) False G198397

Expression Profile