RNA id: TU269373


Basic Information

Item Value
RNA id TU269373
length 2681
RNA type TUCP
GC content 0.41
exon number 6
gene id G198397
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 18858532 ~ 18863366 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttaggtTTATGAAATTCTGTAGTGCTCTCTATGTAGTATTAGTATATTTTCACACATAGGGGATAGTGGTTAGGATACTCACTATGAATTTAAGTGCAACAGTGCCAAACtgtacttttctatttttttttctttagcaaATCATCATTACTATACAAACTTCTCATATCGTAttgtaaaaaagtgcttttcaaAGGTATATTGCCCCATGCCATTAAATGACCTTACAATGTAAAAgctaaaagcaaaaaatatataaaataaataaaaacaaggtCATCTGCTAAATATTGAAACATTTTGAAGATCACAGGATGTCTTGCTCCTCTTCTTCTGTTTGTGtaggacagcagcagcagcatcttcTGAGCCACCGCAGCAGCCACCTTCTCCGTGACACGTCTGCAGCCAGAGCACCCCTCAGCCTCTCTGTTCTCACTGCGTCCTCCTGCCTCTCCTCAACCAGGACATGAACGCTAGAGGTGGCAGCCTCCTCCTGTCCAGTCCACTCCTGTACCTTGACATCCTCCACCTGCTGAACAGTGCCTCTCCTTTCTTCTGCGGTCCACTCTTGTGCCACTGTCTGCACGGATTTGTCTGTCATCCGTCTAAATCTGTCCATCTTTATTGCTGCTTCACTGATGAGTTGCTCCAGCCTCTGCAAGTATTCTTGGGTGCTTGGGTCTGTCCTCTTGCTCTTCAGGTGCTGAATCTCCATCAGCATGCATTCCTTTAACAGGatgatttctttctctctctcaatgaCTTTTTGTCTGTCCGTCTCGCTCTCTTGGCGAAGCGCTTCATTATACCTTTCCATTTCAGACTTCTTTAGCTCCAGCTCGATTTTCTCTTTCTGGATTCCGGCTCTTTCCAGCTCTTTTCTTCGGATGTCTTGTAATCTCTTTTCTAGCTCTTCTTTCATGTCGTCTATTGTTCTAGACATTTTGTCTATCTCCTTTTTGTAGATCAGAAGGTCTCTGTCAGGTGTCTCATCTTCAATGATGGCAAAATCTTCATCGTATGTCTGAGTAGTGCGAGTATTTTGCACTGTAGGTTTGGCATCAGCCATAAAGTGATAGTCTTTTACTTCCTGTTCCACTATACACTGTATGCCAACATCCTTTGCCTCCTTCTTCTCATACGttaactgtttttctctgaaatcTTCTCTGTCCTGTatctctgttttctgtttacttAACTCTCTCCTCATCatctctctttgtttttgttgtatgtCTTCTTCCATTTGCTGCAGAATCTGCTTTCTGCTTTGAATCAGCTGTGCTAAATGTTTCATCTCCTCTATCTGTTTCTGGCTTTCTGCCTTAATCTTCTCCAGATCATTACTTCTTACATTAATATCCTCTAtgatctctttctttttcatttcagcAATTCCAcattctttctctgtttccttTATCTTAGATTTCATACTTTCAAGCTGTAGTTCACATGTTTTTATGGATTTTCTTTTGTCTTCAAGTTCAACTCTCTGTTTCTCCAAGTCAGATCTTATGAGGATAAGTTCTTCTACTACTGCTTCTTCTCCTGTGTGTTGTGGGATGCCATGGAAAAATTCCTGCTGCATTGGTTCGACCGCGTAAGTCTGCGTCTGGGCATCTGTACTTTCTGTCATCGTTGGTCTGTCAGGTTTTATTGTCTCATCTGTCATTGTCTTTACTGGAACACCTATGCTGGATTCCACTTTTTCCATTTCCATTGGCTTTGTTTGTTCTACGCTTCTTGACACCTTCTTCGATGCTCCAGCCTTCATTTGTTCTAGTTCATTTCTTTCTCTACTCAACACATTTTTGTCCATCTctattttctccttctcttctttcACTGCTTGCATGGTCATCTCCAGTTCCTCTGTCATTTTCTGGATTTTGCTTTGGAGTTGCTCCACTCCTTGATCTTTCTCTGCCATGGCTTGTGATAATTCCTTGTTCTTTTTTGTAAGCTTGAGCAATAGGTTTTCATCATTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGAATTTCAGTCTCAGTCTTATCCCTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAGTCTCAGTCTTGTCCCTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTTCAGTCTCAGTCTTATCCTTTTCCTTCTCCCTCTTAGCTTcttcCATTGTTTTAAGATTCTCAGTCTCAGTCTTATCCTTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAGTCTCAGTCTTGTCCTTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAGTCTCAGTCTTATCCTTTTCCTTCTCCCTCTTAGCTTCTTCCAGCattgttttaagatttcagtCTCAGTCTTGTCCTCTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAGTCTCAGTCTTGTCCTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAGTCTCAGTCTTGTCCTCTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAGTCTCAGTCTTGTCCCTTTCCTTCTCCCTCTTAGCTTCTTCCAGCATTGTTTTAAGATTCTCAAAGTCAGTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269346 lncRNA upstream 205738 18651980 ~ 18652794 (+) True G198378
XR_002651701.1 lncRNA upstream 235621 18610759 ~ 18622911 (+) False LOC111195524
XR_002651700.1 lncRNA upstream 235621 18610798 ~ 18622911 (+) True LOC111195524
TU269338 lncRNA upstream 248447 18609564 ~ 18610085 (+) True G198374
TU269332 lncRNA upstream 257907 18600405 ~ 18600625 (+) True G198368
TU269513 lncRNA downstream 209578 19072800 ~ 19073616 (+) True G198468
TU269615 lncRNA downstream 348773 19211995 ~ 19212328 (+) True G198537
TU269665 lncRNA downstream 608137 19471359 ~ 19471750 (+) True G198584
TU269669 lncRNA downstream 623718 19486940 ~ 19490316 (+) True G198588
TU269670 lncRNA downstream 623718 19486940 ~ 19490316 (+) False G198588
XM_007249433.1 mRNA upstream 7247 18850527 ~ 18851285 (+) True LOC103029482
XM_007249378.3 mRNA upstream 731011 18103816 ~ 18127521 (+) True smap2
XM_022683138.1 mRNA upstream 795665 17934694 ~ 18062867 (+) False col16a1
XM_007249380.3 mRNA downstream 43364 18906586 ~ 18924321 (+) True pip4p2
XM_007249381.3 mRNA downstream 43368 18906590 ~ 18924321 (+) False pip4p2
XM_007249383.3 mRNA downstream 136152 18999374 ~ 19011467 (+) True tmem64
XM_007249384.3 mRNA downstream 184718 19047940 ~ 19067708 (+) True bag6
XM_007249389.3 mRNA downstream 184718 19047940 ~ 19067437 (+) False bag6
TU269304 other upstream 473460 18384627 ~ 18385072 (+) True G198344
XR_002651698.1 other upstream 2427998 16424933 ~ 16430534 (+) True LOC111195522
XR_002651697.1 other upstream 2427998 16424933 ~ 16430534 (+) False LOC111195522
XR_002651699.1 other upstream 2427998 16424933 ~ 16430534 (+) False LOC111195522
XR_002651696.1 other upstream 2498864 16345117 ~ 16359668 (+) True atat1
TU269406 other downstream 24247 18887469 ~ 18891614 (+) True G198400
XR_002651704.1 other downstream 241579 19104801 ~ 19116301 (+) False ppp1r10
XR_454774.3 other downstream 303125 19166347 ~ 19182478 (+) False LOC103045134
TU269613 other downstream 341855 19205077 ~ 19205658 (+) True G198535
TU269618 other downstream 383750 19246972 ~ 19247396 (+) True G198540

Expression Profile