RNA id: XM_022683168.1



Basic Information


Item Value
RNA id XM_022683168.1
length 445
RNA type mRNA
GC content 0.52
exon number 2
gene id mrpl36
representative False

Chromosome Information


Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20273021 ~ 20274854 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


GTGGTGGCGCCATGGCACCGCTGTTTCTTCCTCGTCTAGTCAGCTCCCTGACCCGGCAGCTGTCTCATGTTGTGAAGTTTGCGGCTGCCAGCTCCTTACCTGCAGAGTGCCAGCGCTGCATCTCCACTGTCACAGCTGCTTTGGCTCCAGCCAGAGGAATCTTCAGCCCTGTTCAGGGTCTGCGCAGCCCACTCTGCTCACCTTTGGTTGGACAGTGTCAGCAGCTCCTGTGTGTGCAGCCTTCTGCCGGCATGAAAACCAAAACAGCGCTGAAGAAACGCTGCAAAGACTGCTTTTTTGTTCGCCGCAGAGGACGGCTGTTTGTTTATTGCAAAACCCACCCAAGACACAAACAACGGCAGGGATGAGTTTCTTCTGGTTGATCCCACTCTTTGTTGTATTTCACTTcttttctgtaataataaagatatGTGTATCACTGTAA

Function


GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0043229 intracellular organelle cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU269852 lncRNA upstream 2428 20268689 ~ 20271980 (+) True G198730
TU269849 lncRNA upstream 52121 20222046 ~ 20222287 (+) True G198727
XR_002651705.1 lncRNA upstream 101601 20171956 ~ 20172807 (+) True LOC111195527
TU269778 lncRNA upstream 292158 19981683 ~ 19982250 (+) True G198664
TU269765 lncRNA upstream 298351 19975753 ~ 19976057 (+) True G198661
TU269886 lncRNA downstream 69065 20343919 ~ 20344324 (+) True G198754
TU269887 lncRNA downstream 72457 20347311 ~ 20347588 (+) True G198755
TU269899 lncRNA downstream 310870 20585724 ~ 20586099 (+) True G198767
TU269915 lncRNA downstream 444024 20718878 ~ 20719619 (+) True G198777
TU269912 lncRNA downstream 475846 20750700 ~ 20760029 (+) True G198776
XM_007249436.3 mRNA upstream 19628 20249200 ~ 20254780 (+) True LOC103030452
XM_007249412.3 mRNA upstream 118938 20143895 ~ 20155470 (+) True LOC103022559
XM_022683165.1 mRNA upstream 131503 20137797 ~ 20142905 (+) False srfbp1
XM_007249420.3 mRNA downstream 1777 20276631 ~ 20313981 (+) True lpcat1
XM_015605818.2 mRNA downstream 1055151 21330005 ~ 21351097 (+) True LOC103038471
XM_015605819.2 mRNA downstream 1055151 21330005 ~ 21351097 (+) False LOC103038471
XM_007249376.3 mRNA downstream 1055151 21330005 ~ 21338431 (+) False LOC103038471
XM_015605816.2 mRNA downstream 1076708 21351562 ~ 21356335 (+) True LOC107197622
TU269770 other upstream 185421 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 196113 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 1027012 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 1068750 19205077 ~ 19205658 (+) True G198535
XR_454774.3 other upstream 1091930 19166347 ~ 19182478 (+) False LOC103045134
TU269957 other downstream 527517 20802371 ~ 20802890 (+) True G198815
XR_002651708.1 other downstream 1083610 21358464 ~ 21383000 (+) False LOC103037930
TU270302 other downstream 1944411 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 5343074 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 5343180 25618034 ~ 25620129 (+) False ndufs5

Expression Profile