RNA id: TU269887


Basic Information

Item Value
RNA id TU269887
length 278
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G198755
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20347311 ~ 20347588 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGCTGCTCTGCCAGAAGAGGGTCCGGCCCCTGGGGAACTGGTTGAATGGTTGGGGGCGGGTTCTGGGCCAGCCTGGCCGTCAGACCCTGCAGCTGGGCTAAGATCTGCTGTAGGGTCTGCTCATGCTTCCCTATTGCCACCCCCTGGTTCCCCAGGGCAATTTTTACCTGCTCGAGATCCAACTGTTCTGCTGGATCCATGTTTGGGCTGGATCTTTCTGTAATGGGTTGGAGTGCTACAGATAGGTGGCACTCCAGCCCAGAGAGTTGTAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269886 lncRNA upstream 2987 20343919 ~ 20344324 (+) True G198754
TU269856 lncRNA upstream 72480 20273021 ~ 20274831 (+) True mrpl36
TU269852 lncRNA upstream 75331 20268689 ~ 20271980 (+) True G198730
TU269849 lncRNA upstream 125024 20222046 ~ 20222287 (+) True G198727
XR_002651705.1 lncRNA upstream 174504 20171956 ~ 20172807 (+) True LOC111195527
TU269899 lncRNA downstream 238136 20585724 ~ 20586099 (+) True G198767
TU269915 lncRNA downstream 371290 20718878 ~ 20719619 (+) True G198777
TU269912 lncRNA downstream 403112 20750700 ~ 20760029 (+) True G198776
TU269962 lncRNA downstream 467553 20815141 ~ 20815571 (+) True G198820
TU269973 lncRNA downstream 583630 20931218 ~ 20931524 (+) True G198830
XM_007249420.3 mRNA upstream 33330 20276631 ~ 20313981 (+) True lpcat1
XM_022683168.1 mRNA upstream 72457 20274408 ~ 20274854 (+) False mrpl36
XM_007249436.3 mRNA upstream 92531 20249200 ~ 20254780 (+) True LOC103030452
XM_007249412.3 mRNA upstream 191841 20143895 ~ 20155470 (+) True LOC103022559
XM_022683162.1 mRNA upstream 204406 20138584 ~ 20142905 (+) False srfbp1
XM_015605818.2 mRNA downstream 982417 21330005 ~ 21351097 (+) True LOC103038471
XM_015605819.2 mRNA downstream 982417 21330005 ~ 21351097 (+) False LOC103038471
XM_007249376.3 mRNA downstream 982417 21330005 ~ 21338431 (+) False LOC103038471
XM_015605816.2 mRNA downstream 1003974 21351562 ~ 21356335 (+) True LOC107197622
XM_007249374.3 mRNA downstream 1010876 21358464 ~ 21383000 (+) True LOC103037930
TU269770 other upstream 258324 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 269016 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 1099915 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 1141653 19205077 ~ 19205658 (+) True G198535
XR_454774.3 other upstream 1164833 19166347 ~ 19182478 (+) False LOC103045134
TU269957 other downstream 454783 20802371 ~ 20802890 (+) True G198815
XR_002651708.1 other downstream 1010876 21358464 ~ 21383000 (+) False LOC103037930
TU270302 other downstream 1871677 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 5270340 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 5270446 25618034 ~ 25620129 (+) False ndufs5

Expression Profile