RNA id: TU269915


Basic Information

Item Value
RNA id TU269915
length 332
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G198777
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 20718878 ~ 20719619 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCTTTTGCCAGACCAGAAATGGAAACACAGAAGCACAGTGCCTGTCTCTACTGTCAGGAGAAAGGCTTTCATTTAGATTTTGGAGcgttgctgtgaggatttgattgcattcatcaGCAAGACCATTAATGAGGTCAGGATTTTCTGacctccacagctcagtgctgggagACTTTATACCCTTCTAACCTCTAAAATCTTCAAAAGCAAAAAGTTTTAGCTGGTGGATCGTGGACCAGTCAGGCGTGGTTGCggacagcttgtaaaaaataaaacaaaacaaaacaaaaaaacattaaaaataatacaaataaaaaaagatttatgctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU269899 lncRNA upstream 132779 20585724 ~ 20586099 (+) True G198767
TU269887 lncRNA upstream 371290 20347311 ~ 20347588 (+) True G198755
TU269886 lncRNA upstream 374554 20343919 ~ 20344324 (+) True G198754
TU269856 lncRNA upstream 444047 20273021 ~ 20274831 (+) True mrpl36
TU269852 lncRNA upstream 446898 20268689 ~ 20271980 (+) True G198730
TU269912 lncRNA downstream 31081 20750700 ~ 20760029 (+) True G198776
TU269962 lncRNA downstream 95522 20815141 ~ 20815571 (+) True G198820
TU269973 lncRNA downstream 211599 20931218 ~ 20931524 (+) True G198830
TU269983 lncRNA downstream 326973 21046592 ~ 21046889 (+) True G198839
TU269986 lncRNA downstream 340381 21060000 ~ 21060212 (+) True G198842
XM_007249420.3 mRNA upstream 404897 20276631 ~ 20313981 (+) True lpcat1
XM_022683168.1 mRNA upstream 444024 20274408 ~ 20274854 (+) False mrpl36
XM_007249436.3 mRNA upstream 464098 20249200 ~ 20254780 (+) True LOC103030452
XM_007249412.3 mRNA upstream 563408 20143895 ~ 20155470 (+) True LOC103022559
XM_022683162.1 mRNA upstream 575973 20138584 ~ 20142905 (+) False srfbp1
XM_015605818.2 mRNA downstream 610386 21330005 ~ 21351097 (+) True LOC103038471
XM_015605819.2 mRNA downstream 610386 21330005 ~ 21351097 (+) False LOC103038471
XM_007249376.3 mRNA downstream 610386 21330005 ~ 21338431 (+) False LOC103038471
XM_015605816.2 mRNA downstream 631943 21351562 ~ 21356335 (+) True LOC107197622
XM_007249374.3 mRNA downstream 638845 21358464 ~ 21383000 (+) True LOC103037930
TU269770 other upstream 629891 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 640583 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 1471482 19246972 ~ 19247396 (+) True G198540
TU269613 other upstream 1513220 19205077 ~ 19205658 (+) True G198535
XR_454774.3 other upstream 1536400 19166347 ~ 19182478 (+) False LOC103045134
TU269957 other downstream 82752 20802371 ~ 20802890 (+) True G198815
XR_002651708.1 other downstream 638845 21358464 ~ 21383000 (+) False LOC103037930
TU270302 other downstream 1499646 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 4898309 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 4898415 25618034 ~ 25620129 (+) False ndufs5

Expression Profile