RNA id: TU270254


Basic Information

Item Value
RNA id TU270254
length 1670
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G199056
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22196666 ~ 22200711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGATGTTCACAGAATGTACTGTAGCTGCATTCGATTTGTTAAATTTAGTGACAGATTGTTTTTGATAAGTGAACAGACCTTTTGATTGGAGAAGGAAACTATTGAAGAGTATGAATAAAGCAACAGACGTGTTAAATTAAAATTGCTTCCAAGTGTAACCGGATGAACAGAGATGAAAATGCTGGAGTAaccgtgattttttttttttaacataaatgcACTCAAGTCAAATTACTCTAAAAACAACTTGGACAActtgcaaaaaaaagttaattagcTAAGTAAATGCAACATTACTTCCACTGCTGCCTGCATATTTCTGCCAGGGCTTAATTTTAACAGAACAGATTCTCCAAGACATTAAATTTGAATAAAGACCAAGTCTTTACTGTAGAATAGCGTTAAAATTTAGCGTTTAAATTTAAGCCGTTTCAGCAACCCTAAAGCCACAGTACACTTTTCAAACAAACACTGCTGAGAGAAACTAGAGACTTAACCACTCTCATTCACTCTAGTTGTTCCTCTTTTGGTACATCCTAAGGATAACCATAAACATCaaaatgtttgattttattATCCATTGTTATGTACATTTAAAGACAGCTGAAATTccctacaattttttttaaataatcatcaATAAGATTCTACAGAAGTTGGTTAGCTTCACAATACTGCATTCTAGGTGTGGTCAAAACGTCAACATTGTGTTCTTATGCGAGACCGTGATGCACAATATTTTGAGCCTATCATTAATATAGTCTGTGCTTCAAGAACACTGACCAACAGTGTGCATTTCAGATTTTGAATATGCATCAGAGTTCAAGTTATATAGTTAACTGCTTTTGTTCTGCATAACAAAATACCAGATACTGCGTAATGTTAGTCTTTTGTCATTATTTTACCACATCACCCACCCTGACACCATGAGTCACATTATAGATTTAAATTAGAGACAGTCATCACTGTGTGCACAGAGTGAGACTAGTTAAAGCTCCTTTCAAactaaaaagaataaagaatttgAATTAGAAATCACAGCCCTTTACAATCCAGCCGTTTGCCCCACAGCCTGGACAGTgacaatgaaaataaaacaccaaatcAATAAGTCCATTTTAACCAGATTTATTTATAACAACTTCCAGGAAATCTGCTCTACTTCTCGCCTCCCTGCTGCTGGTCTGGCATGCTTCTGATGATATCAGAATCGCCGATCAATGATGGCAAGTGTGCACACCCTGTAGTATTTACCACAGGCTGTGCCAAGTTCAATGTTGTTCCCACTGTAGTGGTGGACACCGGTTTTGGCCAACATGGCGTAGTACTCGACCTCCGATTCCTGAGAGCAGGGCAGTTGTTGGCCAGGATAACCAGCTTGGCTTTGCCTTGGCGAATCATCTTCTGTGACTGTCTATATCCCAGCACATATTTGCCACTCTTCATTACCAGCTGGAGTCTGGAGTTGATGGACTCCAAGGACTTTTCGTTTTCTTAGCGGCCACCATTGTAGCTGTTCAGTCCGTTCTGGCCAACCTGAACACAACAGTCAGACAGATTAGCCCGTTCCCTTTCAGAACAGCACGAAAATACGACGCTAAAGCcgcattaaaacagtattatTCCTAAATTAACCGGAGAGCCGCGCTTACCGCCTGGTGAATCCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270181 lncRNA upstream 205039 21991532 ~ 21991627 (+) True G199006
TU270134 lncRNA upstream 354838 21820975 ~ 21841828 (+) True G198968
TU270131 lncRNA upstream 390927 21805474 ~ 21805739 (+) True G198965
TU270113 lncRNA upstream 539902 21656416 ~ 21656764 (+) True G198947
TU270109 lncRNA upstream 576821 21619638 ~ 21619845 (+) True G198943
TU270301 lncRNA downstream 15168 22215879 ~ 22218387 (+) True G199090
TU270308 lncRNA downstream 60403 22261114 ~ 22261775 (+) True G199097
TU270314 lncRNA downstream 99183 22299894 ~ 22300471 (+) True G199103
TU270352 lncRNA downstream 190655 22391366 ~ 22392565 (+) True G199137
XR_002651711.1 lncRNA downstream 213536 22414247 ~ 22422376 (+) True LOC111195530
XM_007249339.3 mRNA upstream 5514 22176880 ~ 22191152 (+) True LOC103028646
XM_022683442.1 mRNA upstream 26808 22160809 ~ 22169858 (+) True mtdh
XM_007249340.3 mRNA upstream 37242 22150369 ~ 22159424 (+) True LOC103028967
NM_001292029.1 mRNA upstream 48304 22141456 ~ 22148362 (+) True azin1b
XM_007249346.3 mRNA upstream 154119 22035185 ~ 22042547 (+) True LOC103030765
XM_015605813.2 mRNA downstream 841 22201552 ~ 22209038 (+) True LOC103028033
XM_007249337.3 mRNA downstream 868 22201579 ~ 22209038 (+) False LOC103028033
XM_007249331.3 mRNA downstream 26411 22227122 ~ 22252040 (+) True LOC103026526
XM_007249326.3 mRNA downstream 111544 22312255 ~ 22372349 (+) True LOC103025175
XM_022683182.1 mRNA downstream 112341 22313052 ~ 22372349 (+) False LOC103025175
XR_002651708.1 other upstream 813666 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 1393776 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2107679 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2118371 20053051 ~ 20078295 (+) False fndc5
TU269618 other upstream 2949270 19246972 ~ 19247396 (+) True G198540
TU270302 other downstream 18554 22219265 ~ 22223036 (+) True G199091
TU271111 other downstream 3417217 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 3417323 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 3417323 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 4409718 26610429 ~ 26613182 (+) False c23h18orf21

Expression Profile