RNA id: TU270497


Basic Information

Item Value
RNA id TU270497
length 1714
lncRNA type sense_over
GC content 0.42
exon number 1
gene id znf704
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22830231 ~ 22869257 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATATTTAGCAATATAGTGCgactatatatacaatatataatatttagctGTAAGCATAGTTTATAGGCCACCAGCTATAACCCCGAAACTGGTTCTCTTTTCAATCATCATGCAGCAGCGTGAcgggcttgtgtgtgtgtaggccttTTAAACCAGTGGATTAGGCTCCCGGTGGCAGCTGCATTTGATATGTGGCTTAAACCGGGTATTTAGAATGCCTGGGCACGGTGAGCACTCAAGACGGGCTGCCTCGCCGGAGCCCGGTGCTAATCACAGCCGTGCATTCATGCTGCCCTCACCTGGCTCTCTCAGTCCCTGAGGAATCAAGAGCTTCCATGTAGCTCCCTCAAGCAGCAAGAGCTCTAGAACAACAGGTCGCTTTCCCAGCCTCTTAAATAGCAGAGTGCTGCTGGAATTTCTCAGCGGCCATCAGCGAGACTCCCTCGAGTCCTATGAGATGATCAGATCTGCTTGCAGTGAAATTTCTTAGTCATGGGCATCTCACACACAGTTCGAGACTACCAGACACCACACATCTTCAGCAGATCCACATTCACAACATGCTTTTTACTCCCATGGGCGTAATGGCAGCAAGAGCCTGTCTAGACCATTTGTTCCAGTGATGGAACTCTGTTGTGTCCATTTTACTCTCATAATGAGGCTATTCAGCAGCAGACGAGCTGCGGGTCACCAGGGTTCAGGGCCTTTTCTTAATTGATGGTGATAATTGCTGCTCAAAAACACTTCAGCCACAGCCCACGAAAGCCTTCAATgcaactaaaacaaacaaaacatgttcCTATTGTTCAACAGTGTCTGACACCAAGATATATCCTAATAAAAACATTCATTCATGCACTACATGCCTGATTCTCTCAGAAATTATGCAAAATAAggatgaaggtttttttttagtgcaCAGGACCACAAGTCCACATCTCTTATTATTATGCACTTCATATCTTTTTACGATCGTCATATATTCTATACAGGAAAAAGGAGTAGACTGAAGTGGagtagtgaaagagagagagttgacAGTGTCAGAGAtgcttattttctttacttattttctaGAATTGTATCTGCAATACCTTCTGCAAATGAAAGCACTTGCTGTGTGTACAATGTCTCACTGTTCTGTTGTGTTGCAGTGGTTTCCAAACTTACCTGGGGACCCCCAGGAGTCCACAAAAGCAAAAAGATCTAACAATTTGAATTAATTTGGTTTTCCATAATGGGTTTCTAGCCAAAAATGAATTTCATTGAGGActccatttaaaatattattaaggtACCTGAAAATTAACTGATACCAATGAAGATAAGCTGTACTTTGACCCCAGTCATGAACTCAACATCATCAACAAATCCTCTTTTGAGAGCCAAGCCCTGGGCAATAAAAGGGGTCCTACAGCATGAAATGTTTGGAGACCCCTGTCTTTctgcacttattttttttctttatttggtcACTTTTTTCTATTCTGGTTCTCATGTAAGAGAACACACTTGGTGACTGTTATCTTCTCACTCACAGGCTGTGCTCGTTTTTACTCAAAGCCGTGTGTACATAGAGACTGCCATTGTAATTGTGCTAAGGTGACAATGTCCTGGTGCTTGTCGGTGCCGCTGTTGATGTTTCCTTTGGTGTAAGTATGACATTTCAGAGCTCGAGCTCTGACTTCTTggtcacagaaaaataaaagatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270453 lncRNA upstream 158296 22706486 ~ 22709232 (+) True G199202
TU270447 lncRNA upstream 162872 22703511 ~ 22704656 (+) True G199197
TU270440 lncRNA upstream 183092 22679107 ~ 22684436 (+) True G199192
TU270365 lncRNA upstream 381765 22479853 ~ 22485763 (+) True G199145
TU270362 lncRNA upstream 385912 22477548 ~ 22481616 (+) False G199145
TU270498 lncRNA downstream 1834 22871075 ~ 22878356 (+) True G199240
TU270499 lncRNA downstream 1834 22871075 ~ 22878356 (+) False G199240
TU270504 lncRNA downstream 11410 22880651 ~ 22885237 (+) True G199243
TU270505 lncRNA downstream 66520 22935761 ~ 22936265 (+) True G199244
TU270512 lncRNA downstream 67253 22936494 ~ 23001485 (+) True G199250
XM_022683186.1 mRNA upstream 39096 22811769 ~ 22828432 (+) True LOC103021724
XM_022683184.1 mRNA upstream 89687 22714159 ~ 22777841 (+) True LOC111195531
XM_022683185.1 mRNA upstream 89687 22725688 ~ 22777841 (+) False LOC111195531
XM_007249323.3 mRNA upstream 393319 22459246 ~ 22474209 (+) True LOC103024228
XM_022683183.1 mRNA upstream 408650 22448746 ~ 22458878 (+) True fuca1
XM_007249310.3 mRNA downstream 49574 22918815 ~ 22934353 (+) True LOC103046770
XM_007249304.3 mRNA downstream 135042 23004283 ~ 23008734 (+) True hey1
XM_007249303.3 mRNA downstream 164414 23033655 ~ 23053029 (+) True LOC103044827
XM_007249300.2 mRNA downstream 185957 23055198 ~ 23161219 (+) False ripor2
XM_007249298.3 mRNA downstream 217520 23086761 ~ 23161219 (+) True ripor2
TU270302 other upstream 644492 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 1484528 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 2064638 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2778541 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2789233 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 2748687 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 2748793 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 2748793 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 3741188 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 4414979 27284220 ~ 27284567 (+) True G200104

Expression Profile