RNA id: TU270499


Basic Information

Item Value
RNA id TU270499
length 847
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G199240
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 22871075 ~ 22878356 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAATGATTACTCCAACGAATAACCAATTTatcaaacaaaagaacaaaaaaaaagagaaaaacaaattaaatctaaaccaacataaatattataatcCCTTCCCACACCATATATCCCCCTTACTAAAATGTAGGTTCTGGTTAGGTACAGCAGCAGTCCAATAAAATCTGTAATGGCAGCAGGAACGCGGCTCACGCACGTGGCGGCGCGGCTCTCACACGTGACACAGCAATCCACACTCGCTCTCCTCCACGCTGACCCCACAAGTCTCCCACAGACGAGGTAGCTGTAGCAAACAGAAAGGAGAGCAGTATCCTGGCCCACACACAAGCTACGAATCACTCTAAATCCACAAATGATCTCAGTCAGCCACCAGCAGAAGCAAATAGTACACCCAAAGGAATATACTCACAATTAGCCCGGGAGTCGGGTAGTCCAAACTCCCAGGACGTATATTCCAAGCCCGGGTGAAATCCCACAGCGGTAGCCTCGCGCTAGCTCCTCACGCTGCCTCAGCTCCCCCGCTTCCTGCTGGCGCCGCTCGCTCCGCAGCTCCCCTGTGTAGGGCTCGTCGGCGCCGGTACGGCCGGGTCCTTCACGCCACCTCACCGCTACCGCTCGCCTACTTCGTGTCTGCCGCGCGCCGCTTCGCATCCACGCCACGGATGGTTCCCGTTCCCGTGCTCTGTCCTCCATAGTGCTGCAGCTGTGTTTATTCCGGAAGCAGCCCGTAGTACCGCCCCTCTACCGTCCCCATTGGTCACACTTACGGCAGCCATGCAGCCTGGTTGGTCCAGTCATCTGTCCATCAACGTGAGCTGCCGCTCAGGTTCCGGGGTAATCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270497 lncRNA upstream 1834 22867528 ~ 22869241 (+) False znf704
TU270453 lncRNA upstream 161843 22706486 ~ 22709232 (+) True G199202
TU270447 lncRNA upstream 166419 22703511 ~ 22704656 (+) True G199197
TU270440 lncRNA upstream 186639 22679107 ~ 22684436 (+) True G199192
TU270365 lncRNA upstream 385312 22479853 ~ 22485763 (+) True G199145
TU270504 lncRNA downstream 2295 22880651 ~ 22885237 (+) True G199243
TU270505 lncRNA downstream 57405 22935761 ~ 22936265 (+) True G199244
TU270512 lncRNA downstream 58138 22936494 ~ 23001485 (+) True G199250
TU270531 lncRNA downstream 287140 23165496 ~ 23169593 (+) True G199266
TU270632 lncRNA downstream 405784 23284140 ~ 23284424 (+) True G199333
XM_007249311.3 mRNA upstream 1818 22830231 ~ 22869257 (+) True znf704
XM_007249313.3 mRNA upstream 1818 22830231 ~ 22869257 (+) False znf704
XM_007249312.3 mRNA upstream 1818 22830232 ~ 22869257 (+) False znf704
XM_022683186.1 mRNA upstream 42643 22811769 ~ 22828432 (+) True LOC103021724
XM_022683185.1 mRNA upstream 93234 22725688 ~ 22777841 (+) False LOC111195531
XM_007249310.3 mRNA downstream 40459 22918815 ~ 22934353 (+) True LOC103046770
XM_007249304.3 mRNA downstream 125927 23004283 ~ 23008734 (+) True hey1
XM_007249303.3 mRNA downstream 155299 23033655 ~ 23053029 (+) True LOC103044827
XM_007249300.2 mRNA downstream 176842 23055198 ~ 23161219 (+) False ripor2
XM_007249298.3 mRNA downstream 208405 23086761 ~ 23161219 (+) True ripor2
TU270302 other upstream 648039 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 1488075 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 2068185 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 2782088 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 2792780 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 2739572 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 2739678 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 2739678 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 3732073 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 4405864 27284220 ~ 27284567 (+) True G200104