RNA id: TU270797


Basic Information

Item Value
RNA id TU270797
length 1378
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G199469
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 24121268 ~ 24173926 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agattcagatctagcattcgataaacacatatctaatgttactagaacagcttttctacacctccgtaatattgccaagctaagaaatgccctatcactgcatgacgcagaaaaattagtacatgcctttattacctcaaggctagattattgtaatgcgctactgtctggatgttccggcagtaacttaaataaacttcagctagttcaaaatgctgcagccagggtccttactaaaacgagaaaatttgaccatattagtccagtactatcagcactgcactggcttccagtcaaattccgcatagactataaaattctcctgttaacgtataaagccctacacgggctcgctcctgagtatttacaagacctcatctcctgttatgaaccaccgcgattacttagatctcagggtgctggtttattagtagttcctaaaattcagaggagctctgcaggaggcaactctggaataatctccccgaatatgttcgggactcagacacagtctcaatctttaagtctagactgaaaacttacttgtttagtttagcttttggtaattaatgtttttccctttagataaggctgcagattcaggggttcatggacagaggaaattgtggtaaactgagatgctggtgctgttgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttatttagatctgccggagtcatttgccacactctgataatgttttatattctctgttttacataaatccagtcaaaactaattccatctctctgctttcctccgagttactgactgcccacctgtctgacccgataccgcgggatgttggaccctcaggctctcatgtcctctgtctggccagactggaagttactgaagtcagctcttctccatccaccaccaccacttctccatcagctgctcatcatccatctcactctataagccattagtggagctgctatacacctgaatatataaaacctatgtggatgtatgaaagactttttaaaattaatttaaaagccatttgaccagtggtaggatggtcccccctttaatgtgagtcttggtcctcccaaggtttcttcctcctcctgcagctctgagggagtttttccttgcctccgcgctcactgggggttctgtattatgtatattctatgtttaatgttttgcctgattctttgtcctgtaatcatgtttctgtaaagctgctttgtgccaacaccagttgtaaaaagcgctatacaaataaatttgatttgatttgaTttgaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270745 lncRNA upstream 335309 23782931 ~ 23785959 (+) True G199424
TU270761 lncRNA upstream 350804 23769396 ~ 23770464 (+) True G199436
TU270759 lncRNA upstream 352836 23768206 ~ 23768432 (+) True G199434
TU270749 lncRNA upstream 427455 23691498 ~ 23693813 (+) False G199426
TU270750 lncRNA upstream 427455 23691498 ~ 23693813 (+) False G199426
TU270883 lncRNA downstream 46435 24220361 ~ 24220614 (+) True G199546
TU270940 lncRNA downstream 263879 24437805 ~ 24438039 (+) True G199588
TU270978 lncRNA downstream 910058 25083984 ~ 25299692 (+) True G199625
TU270979 lncRNA downstream 913024 25086950 ~ 25112275 (+) False G199625
XR_002651661.1 lncRNA downstream 937883 25111809 ~ 25112275 (+) True LOC111195489
XM_007249265.2 mRNA upstream 172275 23942554 ~ 23948993 (+) True ilf2
XM_007249266.2 mRNA upstream 172275 23942554 ~ 23948993 (+) False ilf2
XM_007249268.2 mRNA upstream 189228 23898683 ~ 23932040 (+) True hpcal4
XM_022683196.1 mRNA upstream 365711 23688512 ~ 23755557 (+) False trit1
XM_007249276.3 mRNA upstream 365711 23688513 ~ 23755557 (+) True trit1
XM_007249264.3 mRNA downstream 67438 24241364 ~ 24251389 (+) True LOC103034043
XM_022683200.1 mRNA downstream 474107 24648033 ~ 25075791 (+) True csmd2
XM_015608266.2 mRNA downstream 1196575 25370501 ~ 25377202 (+) True trappc3
XM_022683203.1 mRNA downstream 1242642 25416568 ~ 25526086 (+) True col8a2
XM_015608253.2 mRNA downstream 1242642 25416568 ~ 25526086 (+) False col8a2
TU270302 other upstream 1898232 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 2738268 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 3318378 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 4032281 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 4042973 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 1444002 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 1444108 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 1444108 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 2436503 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 3110294 27284220 ~ 27284567 (+) True G200104

Expression Profile