RNA id: TU270979


Basic Information

Item Value
RNA id TU270979
length 463
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id G199625
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25083984 ~ 25299692 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTGCCAGACCAGGAAGGGAACACAGGAGCACAGGAAGAAAAAACCCTGGTGATCAAAATGTAAGGAAATTTCAGTTAACGGTCAAGAAGTGGCTCAGAATGGAAGTGGGACATCTTCAGCGACAAGTCCTGCTTTGGTGGTCTTATCTAGCTCTCCAAAAGATTTGTGTGGAGGAATCGAAGTAAGCATCAAGATGAAAGGAACTTTGACAGGCCAGTCGTGTTACAATAacgaggtcctgcaaccagtggttATACCTTTTCTGCATGCACACTCGAGTGCActgtttcaacaggacaatgcctATCctcgctgctgctgctttctcaagagcttgccttgatgACAGAGATGCTATGTAATGTCCAGGTGCATCGCCAGACTTGAATTGAttgaaactgattaaaaatgtgtggtaTGCTTTTGGACATTTTATTATCCCTGGCATCAGCACaaacttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU270940 lncRNA upstream 648911 24437805 ~ 24438039 (+) True G199588
TU270883 lncRNA upstream 866336 24220361 ~ 24220614 (+) True G199546
TU270797 lncRNA upstream 913024 24121268 ~ 24173926 (+) True G199469
TU270745 lncRNA upstream 1300991 23782931 ~ 23785959 (+) True G199424
TU270761 lncRNA upstream 1316486 23769396 ~ 23770464 (+) True G199436
XR_455590.3 lncRNA downstream 184767 25297042 ~ 25300856 (+) True LOC103041709
XR_002651734.1 lncRNA downstream 184768 25297043 ~ 25300856 (+) False LOC103041709
TU271032 lncRNA downstream 196367 25308642 ~ 25308947 (+) True G199669
TU271049 lncRNA downstream 265122 25377397 ~ 25378146 (+) True G199683
TU271050 lncRNA downstream 266304 25378579 ~ 25378825 (+) True G199684
XM_022683200.1 mRNA upstream 11159 24648033 ~ 25075791 (+) True csmd2
XM_007249264.3 mRNA upstream 835561 24241364 ~ 24251389 (+) True LOC103034043
XM_007249265.2 mRNA upstream 1137957 23942554 ~ 23948993 (+) True ilf2
XM_007249266.2 mRNA upstream 1137957 23942554 ~ 23948993 (+) False ilf2
XM_007249268.2 mRNA upstream 1154910 23898683 ~ 23932040 (+) True hpcal4
XM_015608266.2 mRNA downstream 258226 25370501 ~ 25377202 (+) True trappc3
XM_022683203.1 mRNA downstream 304293 25416568 ~ 25526086 (+) True col8a2
XM_015608253.2 mRNA downstream 304293 25416568 ~ 25526086 (+) False col8a2
XM_022683204.1 mRNA downstream 417129 25529404 ~ 25560124 (+) True LOC103042327
XM_007258808.3 mRNA downstream 417129 25529404 ~ 25560124 (+) False LOC103042327
TU270302 other upstream 2863914 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 3703950 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 4284060 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 4997963 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 5008655 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 505653 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 505759 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 505759 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 1498154 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 2171945 27284220 ~ 27284567 (+) True G200104

Expression Profile