RNA id: TU271049


Basic Information

Item Value
RNA id TU271049
length 750
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G199683
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25377397 ~ 25378146 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTAAATCAGAACAGAGCCGCAGTCTTGCATGGTCTGGTAGAAGACAGGCTTTATGGAAAGTTCAGTGCTGTTCAGTCAGTCTGGGAGGGGTCACAGAGCCGGGTAGAGAATGGGACCTGTGTGTCTAGCGCAAGTGCCTAGTCTGTGGCAGGTCCCTCCACACGTGTGTAATGAAGTGTTGTGGCACCAGCCCTGTTCCTCTCCTGAGGTTACCAAGAAGAGGCCTTTACACTGCTGGGGACTGTTATACCTGCAGTGCAGCTGAAGTCAAACAACAATAACAAGGGCCTAATTTGTCTCAGATGTTTACTCAAGCAACATGGAAGCAATCAAGGGCTGCAAGTTCACCGGTGCGTGTGCAGGACAGGGTGTTTTTGGAGACGGTGTGTTTTAACAGGGTGACTTAGGGGTGTGTAGACTGGTTTAGGGCATAGGGCAGAGATCGTTGGCCATTCACTAAAAGGCGCTCATTTCTCTAGCAGATTTCTGGGCCTAACACCTGTTAATGGCCTTACGTCATTCAGGAGTCGCAGGCAGGAGTCTCATTTTCCAACATTCCTCACCTCGTCAATCtcaagtggaacgaaaatgagtGTTAATGTAGTGAGTTCCTAGTTTGTGGAGCTTGAATTCAATCTCGGAAACTTCAGGCATGTGGTATTTTTGCTGTTTCTTAGGTGGTTTTTCAGCCTActttaaatttaattgtaaCTCTTAAAGTTTaaccatttgtttttcttcacagtTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271032 lncRNA upstream 68450 25308642 ~ 25308947 (+) True G199669
XR_455590.3 lncRNA upstream 76541 25297042 ~ 25300856 (+) True LOC103041709
XR_002651734.1 lncRNA upstream 76541 25297043 ~ 25300856 (+) False LOC103041709
TU270978 lncRNA upstream 77705 25083984 ~ 25299692 (+) True G199625
TU271050 lncRNA downstream 433 25378579 ~ 25378825 (+) True G199684
TU271061 lncRNA downstream 138751 25516897 ~ 25548341 (+) True G199691
TU271134 lncRNA downstream 546073 25924219 ~ 25925193 (+) True G199739
TU271135 lncRNA downstream 546073 25924219 ~ 25924536 (+) False G199739
TU271136 lncRNA downstream 546768 25924914 ~ 25925193 (+) False G199739
XM_015608266.2 mRNA upstream 195 25370501 ~ 25377202 (+) True trappc3
XM_022683200.1 mRNA upstream 301606 24648033 ~ 25075791 (+) True csmd2
XM_007249264.3 mRNA upstream 1126008 24241364 ~ 24251389 (+) True LOC103034043
XM_007249265.2 mRNA upstream 1428404 23942554 ~ 23948993 (+) True ilf2
XM_007249266.2 mRNA upstream 1428404 23942554 ~ 23948993 (+) False ilf2
XM_022683203.1 mRNA downstream 38422 25416568 ~ 25526086 (+) True col8a2
XM_015608253.2 mRNA downstream 38422 25416568 ~ 25526086 (+) False col8a2
XM_022683204.1 mRNA downstream 151258 25529404 ~ 25560124 (+) True LOC103042327
XM_007258808.3 mRNA downstream 151258 25529404 ~ 25560124 (+) False LOC103042327
XM_022683205.1 mRNA downstream 189526 25567672 ~ 25579392 (+) True anln
TU270302 other upstream 3154361 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 3994397 21358464 ~ 21383000 (+) False LOC103037930
TU269957 other upstream 4574507 20802371 ~ 20802890 (+) True G198815
TU269770 other upstream 5288410 20053157 ~ 20088987 (+) True fndc5
XR_454777.3 other upstream 5299102 20053051 ~ 20078295 (+) False fndc5
TU271111 other downstream 239782 25617928 ~ 25620129 (+) True ndufs5
TU271109 other downstream 239888 25618034 ~ 25620129 (+) False ndufs5
TU271110 other downstream 239888 25618034 ~ 25620129 (+) False ndufs5
TU271396 other downstream 1232283 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1906074 27284220 ~ 27284567 (+) True G200104

Expression Profile