RNA id: TU271137


Basic Information

Item Value
RNA id TU271137
length 440
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G199739
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 25924219 ~ 25925353 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCACACACTCCTTTTTCGTACCTAGGCTTGTCTGAGCTGTAATCGCAGTAGAGGCCGCGATGATGGTCACAGTTGTCCGCTTCGTTGCACACCTCCCCCACCTGCTTGGCGCAGGCCTTGCAGCAATCACAGCCGTCTGTGATCAGGCTGACTCCTGGCGGGCAGCTCGGGGGTGTTTCGGGGCATGAGCAGGGCCATTTACAGTACTGAGTGCGGTTGTACGGCTCAAGATCGGTGGGCTCTGGCATGACTGGCACCCTGGAGGAAGTCTGGCAGAAGGCCTGTATGAAAAGACATGAAAAGAATGCAAGAAAGAGATGGTTAGCATTATGAATACTTGCATAGCTATTAACTCAGGCAAATATCTAATCAGCCAATCATGTGACCATGGGGCACTACATAAAATCATACAGATAAGGGACAACAGTTTAAGATACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271135 lncRNA upstream 378 25924219 ~ 25924536 (+) False G199739
TU271061 lncRNA upstream 376573 25516897 ~ 25548341 (+) True G199691
TU271050 lncRNA upstream 546089 25378579 ~ 25378825 (+) True G199684
TU271049 lncRNA upstream 546768 25377397 ~ 25378146 (+) True G199683
TU271032 lncRNA upstream 615967 25308642 ~ 25308947 (+) True G199669
TU271139 lncRNA downstream 4571 25929924 ~ 25930410 (+) True G199741
TU271146 lncRNA downstream 47455 25972808 ~ 25973082 (+) True G199746
TU271159 lncRNA downstream 198565 26123918 ~ 26133594 (+) True G199758
TU271175 lncRNA downstream 409363 26334716 ~ 26342264 (+) True G199767
TU271183 lncRNA downstream 559883 26485236 ~ 26485568 (+) True G199775
XM_007258846.3 mRNA upstream 2503 25907057 ~ 25922411 (+) True LOC103024803
XM_007258845.3 mRNA upstream 2503 25907057 ~ 25922411 (+) False LOC103024803
XM_007258847.3 mRNA upstream 2503 25914807 ~ 25922411 (+) False LOC103024803
XM_007258868.3 mRNA upstream 37516 25885213 ~ 25887398 (+) True LOC103031356
XM_007258842.3 mRNA upstream 44257 25876558 ~ 25880657 (+) True LOC103023870
XM_007258848.3 mRNA downstream 34099 25959452 ~ 25969352 (+) False sla
XM_022683212.1 mRNA downstream 34100 25959453 ~ 25969352 (+) False sla
XM_007258849.3 mRNA downstream 34358 25959711 ~ 25969352 (+) True sla
XM_022683214.1 mRNA downstream 72876 25998229 ~ 26074411 (+) True ctnnal1
XM_022683215.1 mRNA downstream 73512 25998865 ~ 26074411 (+) False ctnnal1
TU271111 other upstream 304785 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 304785 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 304785 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 3701878 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 4541914 21358464 ~ 21383000 (+) False LOC103037930
TU271396 other downstream 685076 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 1358867 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 1564690 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 1565584 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1889983 27815336 ~ 27818650 (+) True G200235

Expression Profile