RNA id: TU271183


Basic Information

Item Value
RNA id TU271183
length 333
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G199775
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26485236 ~ 26485568 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctggacagagggctgagactggacagggggttgaaacacagactggacagtgggcttagactggacaaaagactggacacggggctgagactggacagggggctgggcACTAGACAGGGACTGAGACTGGGCAGCAGACCGAACAGAAGACGGGGACTGGacaaaactggacaggggaactgGGACAAATACATTGACAGGGACAGACACGAACATGGTGacggggacaggaacagaaacagagactgaGATGGGTACAGGGACACAAActgagacagggaccaaaacagggagagacacGGGGACCAGATACACAGGAGGGTGCCCAGGACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271175 lncRNA upstream 142972 26334716 ~ 26342264 (+) True G199767
TU271159 lncRNA upstream 351642 26123918 ~ 26133594 (+) True G199758
TU271146 lncRNA upstream 512154 25972808 ~ 25973082 (+) True G199746
TU271139 lncRNA upstream 554826 25929924 ~ 25930410 (+) True G199741
TU271137 lncRNA upstream 559883 25924914 ~ 25925353 (+) False G199739
TU271362 lncRNA downstream 11883 26497451 ~ 26498105 (+) True G199910
TU271375 lncRNA downstream 39567 26525135 ~ 26525376 (+) True G199920
TU271443 lncRNA downstream 298449 26784017 ~ 26788851 (+) True G199965
TU271444 lncRNA downstream 298449 26784017 ~ 26788851 (+) False G199965
TU271458 lncRNA downstream 406061 26891629 ~ 26892574 (+) False cdk6
XM_022683213.1 mRNA upstream 371474 26078650 ~ 26113762 (+) True elp2
XM_022683214.1 mRNA upstream 410825 25998229 ~ 26074411 (+) True ctnnal1
XM_022683215.1 mRNA upstream 410825 25998865 ~ 26074411 (+) False ctnnal1
XM_022683212.1 mRNA upstream 515884 25959453 ~ 25969352 (+) False sla
XM_007258855.3 mRNA downstream 100671 26586239 ~ 26613188 (+) True c23h18orf21
XM_007258856.3 mRNA downstream 129576 26615144 ~ 26623597 (+) True rp9
XM_007258858.3 mRNA downstream 141507 26627075 ~ 26747079 (+) False LOC103028188
XM_022683222.1 mRNA downstream 141507 26627075 ~ 26747079 (+) False LOC103028188
XM_022683221.1 mRNA downstream 141507 26627075 ~ 26747079 (+) False LOC103028188
TU271111 other upstream 865107 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 865107 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 865107 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 4262200 22219265 ~ 22223036 (+) True G199091
XR_002651708.1 other upstream 5102236 21358464 ~ 21383000 (+) False LOC103037930
TU271396 other downstream 124861 26610429 ~ 26613182 (+) False c23h18orf21
TU271651 other downstream 798652 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 1004475 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 1005369 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1329768 27815336 ~ 27818650 (+) True G200235

Expression Profile