RNA id: TU271444


Basic Information

Item Value
RNA id TU271444
length 669
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G199965
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 26784017 ~ 26788851 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGACTTGTAATCTTTAGGGTGTAAAAAAACTCATCTTCTGAGTTCCTTCCTCTTTGCATTTATAATTAAATGCCAGCTAAACTCTGATTAGCATGTGCAAGCTGTCATGCCctacttcctttttgcactctCTGGTTTTATCACTTTTAATCTGGCAATGGTTAATGTTTTACCAGTTAGTGTTTGACCCAGATACTCTTAAAGAGTCATGTGACTTTTTACTACATCACTGAAGAATGTACCTGTTTGTTTTGGATTAGCATGGCGGGCTGTGGAGAAGAAGAACGAATACTCAGTGCTCCCTGCATGCAGCGGGTAGAGGTGCTGTCACAGTGGTAACCATGCGGGCAGCAGTGGATGCCGTCACGACAACACTGACCCTAGAGGAGGAACAGATACAGTTTTAGATCCAGACACTCCAAAACCACAAGACAGATCCAACTGAACCTGCTGAACTGTACCGACATGCTAATGTATACACACCATATTGTAGGGGCAGCAGGCCCACCGTCCATAAGGGGTCCTGCAACACGTTGTACCATCAGGGCAGGTGTAGGAGCTGTCACAATGCACCATGGGGGAAGAGTCATCGGATAACTCCACTACAGTAGCCGAGGGCTTTTCCTCAGTCTcttccacagctttctgaaaagACACAGGGATGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271375 lncRNA upstream 258641 26525135 ~ 26525376 (+) True G199920
TU271362 lncRNA upstream 285912 26497451 ~ 26498105 (+) True G199910
TU271183 lncRNA upstream 298449 26485236 ~ 26485568 (+) True G199775
TU271175 lncRNA upstream 441753 26334716 ~ 26342264 (+) True G199767
TU271159 lncRNA upstream 650423 26123918 ~ 26133594 (+) True G199758
TU271458 lncRNA downstream 102778 26891629 ~ 26892574 (+) False cdk6
TU271593 lncRNA downstream 444630 27233481 ~ 27234147 (+) True G200051
TU271594 lncRNA downstream 444630 27233481 ~ 27234147 (+) False G200051
TU271649 lncRNA downstream 490762 27279613 ~ 27279917 (+) True G200102
TU271657 lncRNA downstream 504828 27293679 ~ 27294340 (+) True G200110
XM_007259793.3 mRNA upstream 6216 26774891 ~ 26777801 (+) True rbm48
XM_022683223.1 mRNA upstream 36938 26627075 ~ 26747079 (+) False LOC103028188
XM_007259796.3 mRNA downstream 43103 26831954 ~ 26892623 (+) True cdk6
XM_007259797.3 mRNA downstream 104996 26893847 ~ 26899447 (+) True fam133b
XM_007259798.3 mRNA downstream 110817 26899668 ~ 26916183 (+) True hepacam2
XM_007259800.3 mRNA downstream 132896 26921747 ~ 27131972 (+) True vps50
XM_007259801.3 mRNA downstream 132896 26921747 ~ 27131967 (+) False vps50
TU271396 other upstream 170835 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1163888 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 1163888 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 1163888 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 4560981 22219265 ~ 22223036 (+) True G199091
TU271651 other downstream 495369 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 701192 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 702086 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 1026485 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 1192662 27981513 ~ 27983350 (+) False LOC103032101