RNA id: TU271593


Basic Information

Item Value
RNA id TU271593
length 248
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G200051
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27233481 ~ 27234147 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tgtcaagtcaagtcaagtcaagtagttttattgtcaatactgcatatgtacaggacatacagagaattgaaattacgttactctccttcccaattttacagcaagtacagataatagatataataaaggagaatgggagacactatgtgtacaatacagcagggacacaaatagacatacatgagacaaaaacaaggtgcagtggtgtgggggaggaatagatatataaatataagtaaataagtaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271458 lncRNA upstream 340907 26891629 ~ 26892574 (+) False cdk6
TU271443 lncRNA upstream 444630 26784017 ~ 26788851 (+) True G199965
TU271444 lncRNA upstream 444630 26784017 ~ 26788851 (+) False G199965
TU271375 lncRNA upstream 708105 26525135 ~ 26525376 (+) True G199920
TU271362 lncRNA upstream 735376 26497451 ~ 26498105 (+) True G199910
TU271649 lncRNA downstream 45466 27279613 ~ 27279917 (+) True G200102
TU271657 lncRNA downstream 59532 27293679 ~ 27294340 (+) True G200110
TU271664 lncRNA downstream 70411 27304558 ~ 27305586 (+) False LOC103023645
TU271680 lncRNA downstream 97867 27332014 ~ 27335222 (+) True G200124
TU271683 lncRNA downstream 122573 27356720 ~ 27356941 (+) True G200125
XM_007259800.3 mRNA upstream 101509 26921747 ~ 27131972 (+) True vps50
XM_007259801.3 mRNA upstream 101514 26921747 ~ 27131967 (+) False vps50
XM_007259798.3 mRNA upstream 317298 26899668 ~ 26916183 (+) True hepacam2
XM_007259797.3 mRNA upstream 334034 26893847 ~ 26899447 (+) True fam133b
XM_007259796.3 mRNA upstream 340858 26831954 ~ 26892623 (+) True cdk6
XM_007259805.3 mRNA downstream 70374 27304521 ~ 27305553 (+) True LOC103023645
XM_007259806.2 mRNA downstream 73319 27307466 ~ 27331589 (+) True LOC103023978
XM_022683235.1 mRNA downstream 183426 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA downstream 183426 27417573 ~ 27443050 (+) False col1a2
XM_007259808.3 mRNA downstream 216862 27451009 ~ 27466504 (+) True casd1
TU271396 other upstream 620299 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1613352 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 1613352 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 1613352 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 5010445 22219265 ~ 22223036 (+) True G199091
TU271651 other downstream 50073 27284220 ~ 27284567 (+) True G200104
trnai-uau_8 other downstream 255896 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 256790 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 581189 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 747366 27981513 ~ 27983350 (+) False LOC103032101

Expression Profile