RNA id: TU271651


Basic Information

Item Value
RNA id TU271651
length 348
RNA type TUCP
GC content 0.45
exon number 1
gene id G200104
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27284220 ~ 27284567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACCTGATTCCTCGATGGTAGAAGTACGTGAGGAAGCTTACCTATGGAATATGGAAGAGCCTACTCTTAATTCAAAACCATCTAGAACTAGAAGTAAGGTGTCTGATTCTGAGAGGGGTGCATACTGTGCTGTAGTAAGTGTTGGTAAACACAAACCGTTAACTTTGGATGACGTCATGCAGGTTGTTACTGAGCAGGGAAAGCAGCTTAGTGAGCTAACGCAGGCAGTAATGGAGTTGACCACTCAGAAAACTCACACGTTCAAACCTGTCTCTAAGGCAAGGGCTCCACTCAGATTTACAGATGATGGCAAACCTATCTGTCTGAAGTGTCAGAAGGAGGGACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271649 lncRNA upstream 4303 27279613 ~ 27279917 (+) True G200102
TU271593 lncRNA upstream 50073 27233481 ~ 27234147 (+) True G200051
TU271594 lncRNA upstream 50073 27233481 ~ 27234147 (+) False G200051
TU271458 lncRNA upstream 391646 26891629 ~ 26892574 (+) False cdk6
TU271443 lncRNA upstream 495369 26784017 ~ 26788851 (+) True G199965
TU271657 lncRNA downstream 9112 27293679 ~ 27294340 (+) True G200110
TU271664 lncRNA downstream 19991 27304558 ~ 27305586 (+) False LOC103023645
TU271680 lncRNA downstream 47447 27332014 ~ 27335222 (+) True G200124
TU271683 lncRNA downstream 72153 27356720 ~ 27356941 (+) True G200125
TU271708 lncRNA downstream 160327 27444894 ~ 27445449 (+) True G200143
XM_007259800.3 mRNA upstream 152248 26921747 ~ 27131972 (+) True vps50
XM_007259801.3 mRNA upstream 152253 26921747 ~ 27131967 (+) False vps50
XM_007259798.3 mRNA upstream 368037 26899668 ~ 26916183 (+) True hepacam2
XM_007259797.3 mRNA upstream 384773 26893847 ~ 26899447 (+) True fam133b
XM_007259796.3 mRNA upstream 391597 26831954 ~ 26892623 (+) True cdk6
XM_007259805.3 mRNA downstream 19954 27304521 ~ 27305553 (+) True LOC103023645
XM_007259806.2 mRNA downstream 22899 27307466 ~ 27331589 (+) True LOC103023978
XM_022683235.1 mRNA downstream 133006 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA downstream 133006 27417573 ~ 27443050 (+) False col1a2
XM_007259808.3 mRNA downstream 166442 27451009 ~ 27466504 (+) True casd1
TU271396 other upstream 671038 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1664091 25617928 ~ 25620129 (+) True ndufs5
TU271109 other upstream 1664091 25618034 ~ 25620129 (+) False ndufs5
TU271110 other upstream 1664091 25618034 ~ 25620129 (+) False ndufs5
TU270302 other upstream 5061184 22219265 ~ 22223036 (+) True G199091
trnai-uau_8 other downstream 205476 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 206370 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 530769 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 696946 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 909007 28193574 ~ 28196198 (+) True G200341

Expression Profile