RNA id: TU271708


Basic Information

Item Value
RNA id TU271708
length 556
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G200143
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27444894 ~ 27445449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tggaatcactcaattctgaggaaaaaagtatggaatcactcaaattgaaggtagaaaataaggacacacccagtcaatttcctttccctaaatggacacctgcctcagattagatctgcttgttagtctgcagttaaaaacacctgcagtcatgactccttggagggctgctggacaaattagagtggcaagaaccatggctccaacaagagaaatgtctcttgaaacaaaatagaggattgtgaaacttcttgaagaaggtaactcttcacgcatggttgctaaatgtgggctgttcacagtcagctgtatccaagatatggaccaaatacaaacagcatggaatggttgttaaagccaagcatactggtagaccgagaaagacatcaaagcgtcaagacaagcaacttaaggccatttgtcttgaaaaccgaaaaagtacaactaaacagatgaagcataaatgggaagaagctggagccaatgtatgtgaccgaaccgtaagaaatcgcctaaaggaaatgggatttcaatacaggaaagctaaaagaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271683 lncRNA upstream 87953 27356720 ~ 27356941 (+) True G200125
TU271680 lncRNA upstream 109672 27332014 ~ 27335222 (+) True G200124
TU271664 lncRNA upstream 139308 27304558 ~ 27305586 (+) False LOC103023645
TU271657 lncRNA upstream 150554 27293679 ~ 27294340 (+) True G200110
TU271649 lncRNA upstream 164977 27279613 ~ 27279917 (+) True G200102
TU271719 lncRNA downstream 21911 27467360 ~ 27468802 (+) True G200148
TU271737 lncRNA downstream 66539 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA downstream 66539 27511988 ~ 27515678 (+) False G200158
TU271747 lncRNA downstream 161024 27606473 ~ 27609051 (+) True G200166
TU271804 lncRNA downstream 285421 27730870 ~ 27740109 (+) False dync1i1
XM_022683235.1 mRNA upstream 1844 27417573 ~ 27443050 (+) True col1a2
XM_022683236.1 mRNA upstream 1844 27417573 ~ 27443050 (+) False col1a2
XM_007259806.2 mRNA upstream 113305 27307466 ~ 27331589 (+) True LOC103023978
XM_007259805.3 mRNA upstream 139341 27304521 ~ 27305553 (+) True LOC103023645
XM_007259800.3 mRNA upstream 312922 26921747 ~ 27131972 (+) True vps50
XM_007259808.3 mRNA downstream 5560 27451009 ~ 27466504 (+) True casd1
XM_022683237.1 mRNA downstream 33287 27478736 ~ 27588721 (+) True ppp1r9a
XM_007259814.3 mRNA downstream 49826 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259815.3 mRNA downstream 49826 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259816.3 mRNA downstream 49826 27495275 ~ 27588721 (+) False ppp1r9a
TU271651 other upstream 160327 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 831712 26610429 ~ 26613182 (+) False c23h18orf21
TU271111 other upstream 1824765 25617928 ~ 25620129 (+) True ndufs5
trnai-uau_8 other downstream 44594 27490043 ~ 27490136 (+) True trnai-uau_8
trnai-uau_9 other downstream 45488 27490937 ~ 27491030 (+) True trnai-uau_9
TU271825 other downstream 369887 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 536064 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 748125 28193574 ~ 28196198 (+) True G200341

Expression Profile