RNA id: XM_007259820.3


Basic Information

Item Value
RNA id XM_007259820.3
length 4627
RNA type mRNA
GC content 0.45
exon number 17
gene id dync1i1
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27634679 ~ 27740109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGCGGTGCTCATTTGACAGCATGTGTTGCCGGAGTGGTGCTGTTTCTCCCATACTGCCTTCAATCTGGAGCAGGAGGACAGAGTAGGGTTTACAGATGAAACAAGGCTGAATATGAAAGTGCATTTGATCTGGCTGTTATTTAAGAGCCCGATATCTGCAGCAGAGCATCCCAGTGCAGGCATGCTTTACTGAAACCTGATCATCACTGCGGGtcaaagagagtgtgtgtgtgtgtgtgtgtgtggtactgaGGAGTGATACAGCATCTTTCCAGGGGACAGCATCCATACGGCCATCAGGACAAAATGGCTGACAAGAGTGACCTAAAAGCAGAGCTGGAGCGCAAGAAACAGCGCCTAGCTCAAATCAGggaggagaaaaagaggaaggaggaagagaagaagaagaaagagtcagaaacacagcagaaaGCAGAGACTGTCCCAGAGGACTCTGATTTGGACCGCAAGCGCAGAGAGACTGAGGCGCTTCTACAGAGTATCGGAATCTCCCCCGAGCCTCCGTTAGtTCCAACACAAATGTCTCCTTCAAAGTCAATGAGCACACCGAGTGAGACAGGCAGTCAGGACTCAGTGGATGGTGCTGCTGCGGGCAGGACCCTGCAGTGGGACACTGACCCCTCTGTTCTGCAGCTGCAGGCTGACTCTGAGCTCGGACGCAGAATGCACAGGCTTGGAGCATCTAAGATCACCCAGGTGGATTTCCTGCCCAGGGAGGTGGTCTCGTACTGTAAAGAGACACAGACTCCTCTAGCAGCTCATCAGTCTGAAGaagaagaagaggaggatgaagataaTACAGAGCCCAAAGCAGGCCTGGAGTCCGACCAGAAGGAGGATGAGGAGAACAAGGACTCAAAGGAAGgccACCCGCGGGAGCTGACGGAGGAGGAGAAGCAGCAGATTCTGCACTCTGAGGAGTTTGTGATCTTTTTTGACCGCAGCATTCGGGTAATGGAGCGAGCGCTTGCTGAAGACTCCAACATCTTCTTCGACTACAGCGGCCGAGACCTCGAGGATAAAGAAGGagACCTGCAGGGGGGGTCTAGTCTGTCCTTCAGTCGTCTGTTCTATGATGAGCGCTGGTCTAAGCATCGGGTCATCACCTGTCTGGACTGGTCCCCTCAGTACCCAGAGCTGCTGGTGGCCTCCTATAACAACAACGAGGATGCCCCTCATGAACCAGACGGCGTGGCCTTAGTGTGGAATATGAAGTTCAAGAAGACCACGCCTGAGTACATCTACCACTGTCAGTCTCCCGTGGTGTCTGTGGGTTTCGCCCGGTTTCATCCTAACCTGTTGGTGGGTGGCACCTACTCGGGGCAGATCGTGCTCTGGGACAACCGCAGCCACCGGAGGACCCCGGTCCAGAGGACACCGCTCTCTGCAGCTGCACACACTcaTCCAGTGTACTGTGTAAATGTGGTGGGGACCCAGAATGCCAATAACCTGATCACAGTGTCCACAGATGGCAGGATGTGCTCCTGGAGCCTGGACATGCTCTCTCAACCACAGGAGAGCATGGAGCTGGTATATAACAAGTCTAAACCAGTAGCTGTGACTGGGATGGCCTTCCCAGCAGGAGACGTGAATAACTATGTGGTAGGCAGTGAGGAGGGAACTGTATACACTGCATCTCGACATGGCAGTAAAGCTGGTATCTGTGAGATGTTTGAGGGCCACCAGGGGCCGGTGACTGGTATCAGTTGTCACAGTGCCGTGGGCCCCGTGGACTTCTCTCACCTGTTCGTCACCTCCTCCTTTGACTGGACTGTGAAACTCTGGAGCACAAAGcaCAATAAGCCGCTGTACTCCTTTGAGGACAATGCAGATTATGTGTATGATGTCATGTGGTCTCCGGTGCACCCCGCTCTCTTTGCCGCAGTGGATGGGATGGGTCGTCTGGACCTGTGGAACCTCAACAATGATACTGAGgtGCCTACAGCCAGTGTGACGATTGAAGGAGCCCCGGCTCTGAACCGTGTGCGCTGGGCCTCTGGAGGTAAAGAGGTGGCTGTGGGAGACTCAGAGGGCCGGGTTTGGATCTATGATGTTGGAGAGCTGGCAGCAGCGCACACCGAGGACTGGGCACGCTTCGCTCGCACGCTAGTGGAGATCCGCGCCAACCGGGCCGACGGTGAGGAGGAGGGGCCGGTGGAGCTGACCGCGTAGAGACGCAGTCTCAGAACATCTGACCAACACTGTCTGTCCTACATCAACATTCAGCCCGGCGTGACTCACCCACATAGCGGCCAGCATGTGCATTAGAGCTTTAATCCAGTCTGAAAACCAGATCAGAACTCAACATTACACAGCCGGAGTCGCGGCCAGAGTCTCGGCCACAGCCGCAAGTTTGGATGGCGAATCCGTCCGAATGACTGCAGTTCTACGATATTCAGTCCCGGCCCGACCACCAGCACCAACTGGAGACAGAACGCTTTAAATGGCCCTGGTAAACCTGAAAACCCTGTAAAAGTCACAGatttttaaaatctcaattaCCAGGCCTGGAGATGCATTTAGGACATTTAGGAAAATggttaaaattcttaaaaaccTCTATTACAAGGATTACCGGTATTAAGCAAAATGATTTCCTTAGAAGCACGcttaatattttgatattttaaggGGGAAAAGTGTTCAACTGGTCAACCTCAGAGCCAGAGCCAACATAAATGACTCCAGCATgcaaataaaaactgtaaaaagtaaaacagcGAGAAAATCTATAGAAATGTGGATACTGACTATTGGAAGCCTCGATGTTTGAAGGTTTAAAGACATATTTAAAGCTCTAATGTGCATCTACACAGCACTAGGCCCTGTTCACACGTATCCGGAaattttaaaacacataaattTACCtcccacaattttttttttttttttttgctaatctTTCTATTAACATTGATACAGAAATGCTCGCATGATACACACTTTTCCCTACGTAGTGCACCATGCAAGCCATTAAATTACAGATGctaaatctaaataaagaactatgtatatatttgtaacaGATCTAGCTACAagaactaactaactaactaatctgaaagatgatgatgtagtTTTATGGCTTATGTAGTTCACTACATAGGAAAAAAGGATGTATTTGAGATTTAGACAGAGGCATGCATGctttcaatatttaatattccacattaaagtacatttttaaaaagttcagttttcagtgattaaaaaaaatgcattttatgagGGCAGAAGCCTAATACTGCAATGTGGAGAATCTGGCGATACCAATTCCGATCAGATGCAGTTGCTGAACACAGCCTTCTAAATAACATCATGCTCAAACTGTGAAACAAATATTCTACATAAAGaacaaacacatacattacTGGCTTTAATAACAGGCTGACAGCACTGATATAGTTAGTGGCTACAAAGTTATAAATGTTCATGTGTTTGCAGTAAAGATGAGCATTAAATGCAAACCATTATGGCCATTGGGTTTGTAGTGTAGTAACTTTGaatagtacttttttttttgctcagtgcTAGAATTCTAATCTGTTTAGGGCTTGATTAAGTAAATGAAGTCTGGTTCAATGACAAAAAACCAAGGTCCAGATGTGGCCCACAAATGCAACGTCCAGGTCTGGTTTTGACTTAGGTTTTGATCATATTGGTAATACTTCTTTTTcttccaatatttttattaagtgattttaaaaatatccggATACGTGTGGATGTAGCACTATTTACTCTGGTTTTGTTCATCACAGATTCCTTATACAGAGCCCACACGTATTATGATGATCAGCTGAAGCACTTTGTATTGCTTTGTACTTCTGTTGTGCGAGAGTCTACTGTAATTCACTCGTTCTGTTTGTTAACATAGCTTATGATGTGTACCGGTAATCACAAGTCATTGTTTTAGCAGTTGTTTATTTATGGGATTTACGTGCCAGATTTGTTACACTGAAAGATAAGGCCTGCTGCCATAGGCTTTTGGTAATCaatgtgaagtaaaaaaaaaaaaaaaaaaaaaaaaaagctcataaGCTGCTATGAAGCTTCTTAATGCAGGCCAAAGAGGACAGGATCCTTTGCACGGTCAattacttgctgtgcttgtgctgtgcatttgtgtgtgtgtgtatgtatgtatgtgtgtatatatatttttgtatttacttcctGCATGAAGTACAGTAATGAAGCGAGTCCTACAGACATGTGACCGTCTCAACTAGAGTATTTATAACGGCTACAAGGTTAATGTCAGTCAATGACAATGAAGTGTGTTGTGCTTATGAAAAGACAGGAGTTTAATTCCACATTTAATCGATACAGTGTGCTGACGGAAAAGCCAGAACGTATTGCTATGTACGAGATGTGTGCCCAGTGGTTTCATGCtaataaaaatggcaaaatggcATATGCTTCCAAACCGCATAAAAAGCAACAGTTTGCTTTCATTTCCGTCTAATAAACATGTTCTCTGCATTAGTGCTACACATATTGCTGCCATACTTACATTAAGGCACAAACATCACACATGCCTACTACTGTATGTGTACACTGTATAAATCctgcacaataaaaaaaaaacaaatagaccaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271747 lncRNA upstream 25628 27606473 ~ 27609051 (+) True G200166
TU271737 lncRNA upstream 119001 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA upstream 119001 27511988 ~ 27515678 (+) False G200158
TU271719 lncRNA upstream 165877 27467360 ~ 27468802 (+) True G200148
TU271708 lncRNA upstream 189230 27444894 ~ 27445449 (+) True G200143
TU271880 lncRNA downstream 179958 27919455 ~ 27919995 (+) True G200278
TU271931 lncRNA downstream 264037 28003534 ~ 28003890 (+) True G200317
TU271942 lncRNA downstream 292354 28031851 ~ 28032098 (+) True G200327
TU271947 lncRNA downstream 322873 28062370 ~ 28081260 (+) True G200332
TU271949 lncRNA downstream 357505 28097002 ~ 28097344 (+) True G200333
XM_007259817.3 mRNA upstream 32639 27595858 ~ 27602040 (+) True asb4
XM_007259814.3 mRNA upstream 45958 27495275 ~ 27588721 (+) False ppp1r9a
XM_007259826.3 mRNA downstream 119627 27859124 ~ 27862168 (+) True dlx6
XM_007259828.3 mRNA downstream 134379 27873876 ~ 27893526 (+) True ago2
XM_007259829.3 mRNA downstream 156627 27896124 ~ 27901307 (+) True LOC103030526
XM_022683244.1 mRNA downstream 156627 27896124 ~ 27900887 (+) False LOC103030526
XM_007259830.3 mRNA downstream 166684 27906181 ~ 27919226 (+) True LOC103030835
trnai-uau_9 other upstream 143649 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 144543 27490043 ~ 27490136 (+) True trnai-uau_8
TU271651 other upstream 350112 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 1021497 26610429 ~ 26613182 (+) False c23h18orf21
TU271110 other upstream 2014550 25618034 ~ 25620129 (+) False ndufs5
TU271825 other downstream 75839 27815336 ~ 27818650 (+) True G200235
TU271914 other downstream 242016 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 454077 28193574 ~ 28196198 (+) True G200341
TU272690 other downstream 1811639 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 3270429 31009926 ~ 31012165 (+) False rbm24

Expression Profile