RNA id: TU271825


Basic Information

Item Value
RNA id TU271825
length 564
RNA type TUCP
GC content 0.41
exon number 3
gene id G200235
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 27815336 ~ 27818650 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTAGAGAATTGGTTTATTATCACAAATATTAACACCATCCTAATGGATGTGGaacaaagacttaaaaaaacgaaacaaaacaaaaaccttgcactctcacactctctgcacacagacacacattatTTCTGTTCCATTTTCCACACTCCACTGGCAAAGATCAGGATTCCTGACATCTTACATAAGAAATAAGCAAAATCACATTTGAAAACGTTCAGATGGAACCAATAACGGTCAAATGTGATGAAACAATCTTCAGCTTAGCACGTTCAGTGTTACGAAGTCTCCATCTTATATCCATGCTTTTCAAGCTCAGCCCAACTGATTGGAAAAGTCATCCTCTACATTGTCATCATCCCAGTTATCTTCCCACACATGAGCATCCTCGTCTTCGTCCAAACCGGTCCAATCTCAGCTGGGAATTCTTCAAATTCATCATCCTCCTCCAGCAAGCCCAGGTCCACGGTCTGTTTCTTCTCCGACATGTTAAATTAATATCCGCTAATCTTCAGCAGAGCTCAGACACGACCATGAGATTAGCTATGGCTCATACACGCCCTCCGT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271804 lncRNA upstream 75227 27730870 ~ 27740109 (+) False dync1i1
TU271747 lncRNA upstream 206285 27606473 ~ 27609051 (+) True G200166
TU271737 lncRNA upstream 299658 27511988 ~ 27515678 (+) True G200158
TU271738 lncRNA upstream 299658 27511988 ~ 27515678 (+) False G200158
TU271719 lncRNA upstream 346534 27467360 ~ 27468802 (+) True G200148
TU271880 lncRNA downstream 100805 27919455 ~ 27919995 (+) True G200278
TU271931 lncRNA downstream 184884 28003534 ~ 28003890 (+) True G200317
TU271942 lncRNA downstream 213201 28031851 ~ 28032098 (+) True G200327
TU271947 lncRNA downstream 243720 28062370 ~ 28081260 (+) True G200332
TU271949 lncRNA downstream 278352 28097002 ~ 28097344 (+) True G200333
XM_007259819.3 mRNA upstream 75839 27634679 ~ 27739497 (+) True dync1i1
XM_022683241.1 mRNA upstream 75839 27634679 ~ 27739497 (+) False dync1i1
XM_007259820.3 mRNA upstream 75839 27634679 ~ 27739497 (+) False dync1i1
XM_007259822.3 mRNA upstream 75839 27634679 ~ 27739497 (+) False dync1i1
XM_007259817.3 mRNA upstream 213296 27595858 ~ 27602040 (+) True asb4
XM_007259826.3 mRNA downstream 40474 27859124 ~ 27862168 (+) True dlx6
XM_007259828.3 mRNA downstream 55226 27873876 ~ 27893526 (+) True ago2
XM_007259829.3 mRNA downstream 77474 27896124 ~ 27901307 (+) True LOC103030526
XM_022683244.1 mRNA downstream 77474 27896124 ~ 27900887 (+) False LOC103030526
XM_007259830.3 mRNA downstream 87531 27906181 ~ 27919226 (+) True LOC103030835
trnai-uau_9 other upstream 324306 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 325200 27490043 ~ 27490136 (+) True trnai-uau_8
TU271651 other upstream 530769 27284220 ~ 27284567 (+) True G200104
TU271396 other upstream 1202154 26610429 ~ 26613182 (+) False c23h18orf21
TU271109 other upstream 2195207 25618034 ~ 25620129 (+) False ndufs5
TU271914 other downstream 162863 27981513 ~ 27983350 (+) False LOC103032101
TU271959 other downstream 374924 28193574 ~ 28196198 (+) True G200341
TU272690 other downstream 1732486 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 3191276 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 3194061 31012711 ~ 31015045 (+) True G201018

Expression Profile