RNA id: TU272156


Basic Information

Item Value
RNA id TU272156
length 929
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G200482
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 28703778 ~ 28745324 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atccaaCATTCAGCATTCAGACATATCCACACCAGTGCTTCTTGCTTATAGAATCACTGAAGCTGCataacacaaacaaaataatgcAGTACATATGGCTTCATATGGCAACTTTGGTGAAATGGATATACAGCAGTTTAATTGTGGCACAATTATGTACAATTATCAAATATGTGAATAAAGATGTTTAGCAGAACACTTACAGCATGAAATCAAGCATTTTCCTCTTGTGCTTATTGAAATAAAACTCAGCTGCTGTAATCATGTGTGCACACAGGGCTCTCGCGCTCTGAGTGCTTGTGTGTATTAAAGCGCACTTTAGGCAAGGGTCACATATGTAGCATCAGTGGTCACTCCACAGTTGTTGTCTTTCATAGACATGAGCACATAGCCATCGTTTCCCCAGTAAGTGGACCAGGAGTTCTTCACTAGCCAGTAAGGCTGTCCGTCCAGAACCCCGTAACCCACCGCCAGCACAGCATGATCCAGGTCATCCGGCCCATTctTGCAGGCAGGTTCATAATACACTCCGTTACTGTAGAAGGTGAAGGAGCGGTGAGCAGCGTCGATGCTGACTGCAGTGGGGCCGTTTTTAAACAGTGCAACCTTCAGAGCCTCTGCATCACCGCTGGTCACATTTGTGTAACTCTTGACGCGAGCAGTCAGCTGGGATGAGTTATAGTGACACAGGCCATTcatGCCAGTGTAAGATCCATAGCTCTCTGCAGTGGAGATGCCACCGTGTTTCATGACCCATTCATATGCTCTCCACTCCTCTCCTCCATCACACCCATTATTACCAAAACCCCACGTGCAGTCCACCAGCATCTGCTGAGACAACACCACCCGCTCTCCTGtctgagaaaaagaaataaatacagttaataCAGGCTATTACAAGGTAACATGcctcatttaaatgttttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272047 lncRNA upstream 24616 28672884 ~ 28679162 (+) True G200402
TU272022 lncRNA upstream 54330 28647269 ~ 28649448 (+) True G200386
TU272042 lncRNA upstream 58258 28642085 ~ 28645520 (+) True G200399
TU272040 lncRNA upstream 61746 28641167 ~ 28642032 (+) True G200398
TU272031 lncRNA upstream 85724 28616116 ~ 28618054 (+) True G200391
TU272165 lncRNA downstream 15232 28726065 ~ 28728956 (+) True G200488
TU272169 lncRNA downstream 26018 28736851 ~ 28738326 (+) True G200490
TU272200 lncRNA downstream 59301 28770134 ~ 28782034 (+) True G200511
TU272429 lncRNA downstream 307740 29018573 ~ 29019097 (+) True G200628
TU272650 lncRNA downstream 751328 29462161 ~ 29467157 (+) True G200780
XM_007245656.3 mRNA upstream 3998 28681071 ~ 28699780 (+) True LOC103028750
XM_007245654.3 mRNA upstream 31331 28657320 ~ 28672447 (+) True LOC103028128
XM_007245651.3 mRNA upstream 111591 28584404 ~ 28592187 (+) True anp32e
XM_007245648.3 mRNA upstream 190191 28508137 ~ 28513587 (+) True jtb
XM_022683246.1 mRNA upstream 197293 28416518 ~ 28506485 (+) False kcnq4
XM_007245661.3 mRNA downstream 36254 28747087 ~ 28755459 (+) True crtap
XM_022683251.1 mRNA downstream 73809 28784642 ~ 28802718 (+) True fbxl2
XM_022683252.1 mRNA downstream 97496 28808329 ~ 28874267 (+) True clasp2
XM_022683253.1 mRNA downstream 97496 28808329 ~ 28874267 (+) False clasp2
XM_022683263.1 mRNA downstream 97496 28808329 ~ 28874267 (+) False clasp2
TU271959 other upstream 507580 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 720428 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 885128 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1212748 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1213642 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 840303 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 2299093 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 2301878 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 2719714 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 2720118 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile