RNA id: TU272650


Basic Information

Item Value
RNA id TU272650
length 1234
lncRNA type inter_gene
GC content 0.46
exon number 9
gene id G200780
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29462161 ~ 29467527 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaatagTAAGTGATCAGATATATTAGAAATTCAGTTCCATTAAATccagtttaataaaacaaaaactagtTCAGTGCAATAAAACGAAAGAGAACTGGCTTGTAATCAATCTGTAAAATGTCATTAGAGACAGAAACATAAGTAAGAAGTGTGAAACAGTACAGTGTAGCTTCATATGGCTATTGTTCATTCCTGCTGCGGCTTTAGCGTATGTAGGGAAGTAGTTTGGCATTGAACCACTCGCGAGAGAACTGTAAATGATCTCCATCAGTAGCAAGAAACACCAGCTTCCCCGCTTTATCCATTTCAGCCAATCCCAGTCGATCCTTTTATACAGAGCgctttcctgtaaagtttccGTCTTCTCAGCCTGACCAGTCACGAAGAACCCAAACCACTCTGAATCCACAGGGTCCACTACACTGTCCTGCAGGAACTTAACCATCACAAACTTCTCCAGCAACATGAGGTTCTTCTTGTACGTCTGATTCACCACCCGCTCCTGGTTTATATCAGCCAGGAAGAGGCTGTGCTGTTTGTACAGGTCATCATTGAGAGGATCGTGCCAGTACTGCGCCTGCACCAAATGTTTTTGGATGGCGTCTGTGTAAGCTCCAGAATTGAGCTTCTTCCGGATCCAGTCACAAATATGAGAGCTCTCCCCGGGGCAGCGAGGCAGACCATACACTCCTTGATGTTGTCCACCAACTGAGATCAGAGTCTTCATTGGAGGATTTGGACATCTCTGAGCCACAGCACGTAGAAACTGTGCCCCCTGAGAGAAGCCCATTGCATTGTAACCTGCTTTCAGCTTGGGGTCCTGGGCTAGTTTCTCACATACAAAGGACACTTGCTCATTAACATCCTTGAAGAACCCACTTTCAGTATCCTGAACAACAGTCTTGCCGATCATAAGAGATAACACATATATACCAGGCACTTCCTCTTCCACCATTTTCTTGATTGCACCCATGCTCAGAGGGTTGCAGCAGTTGTCCCCCATCCCATGCCAGATGACCAGGGGGGTGGTATCGTTGGACCCTCGAGCTGATCCTGAGATCAGGAGGAATGCACCAACTCCAATGAACAGGCGTGGGTCCATGTTCAgtccagctgctgctgcagatcCAACACAGCAGAGTTAATATTACAGACAACAGGAAGACAACAGAGACATCATGTGATTATTTATAAGGAAGCGGTGAGAGAAAGCGCCCTGTGGCTCAGGGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272429 lncRNA upstream 443064 29018573 ~ 29019097 (+) True G200628
TU272200 lncRNA upstream 680127 28770134 ~ 28782034 (+) True G200511
TU272159 lncRNA upstream 716837 28703778 ~ 28745324 (+) False G200482
TU272169 lncRNA upstream 723835 28736851 ~ 28738326 (+) True G200490
TU272165 lncRNA upstream 733205 28726065 ~ 28728956 (+) True G200488
TU272661 lncRNA downstream 17783 29484940 ~ 29485686 (+) True G200785
TU272676 lncRNA downstream 60906 29528063 ~ 29568073 (+) False lypla2
TU272694 lncRNA downstream 82157 29549314 ~ 29552883 (+) False eloa
TU272696 lncRNA downstream 82157 29549314 ~ 29552883 (+) False eloa
TU272697 lncRNA downstream 82157 29549314 ~ 29552883 (+) False eloa
XM_007245698.3 mRNA upstream 1530 29449616 ~ 29460631 (+) True cap1
XM_007245699.3 mRNA upstream 14952 29423417 ~ 29447209 (+) True kiaa0319l
XM_022683294.1 mRNA upstream 59878 29397398 ~ 29402283 (+) False syce1
XM_022683295.1 mRNA upstream 59878 29397398 ~ 29402283 (+) False syce1
XM_007245695.3 mRNA upstream 59878 29397400 ~ 29402283 (+) True syce1
XM_007245706.3 mRNA downstream 1592 29468749 ~ 29478259 (+) False LOC103042153
XM_007245703.3 mRNA downstream 1605 29468762 ~ 29478259 (+) False LOC103042153
XM_007245705.3 mRNA downstream 1605 29468762 ~ 29478259 (+) False LOC103042153
XM_022683298.1 mRNA downstream 1605 29468762 ~ 29478259 (+) False LOC103042153
XM_022683297.1 mRNA downstream 1606 29468763 ~ 29478259 (+) True LOC103042153
TU271959 other upstream 1265963 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 1478811 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1643511 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1971131 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1972025 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 83979 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 1542769 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 1545554 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 1963390 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 1963794 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile