RNA id: TU272697


Basic Information

Item Value
RNA id TU272697
length 845
lncRNA type sense_over
GC content 0.39
exon number 3
gene id eloa
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29542748 ~ 29552884 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aATCAGACCTCCAATGTCCTACAGTTCCCACAATCAGTCAAGTGAAGGTGGTCAGTCTTCCTTTAGCAGTCCTCCTGAGTCCTCTCGTTCTTCTGCTCCTAGCAGCAGTGCTGGCCCTAGTGCCAGAGACAAACCACAGGTCAAAAAAATTGCCCCTATGATGGCTAAAACTATCAAAGCATTTAAGAACAGATTCTCTCGACGGTAAAAACAGAAGAATGACTGGATTTCTGTTCTGGGAGAAAATGTGGAGTGTGAGAGTGTAAAGTCAAATCTCATTTTAATGTAAAGCCTCCTCTCCTCTTATGGTTTTATGCTTTTAGTTGTATTCATTTCTGATCACTGGAAGAAGGGGAAAAAATTACACACAAGCAAGCAGTGTTATGGCATGTAGGTATTTGTCACACTTTCGACACAATCACAATCTGTACAGTGGATCATTACACTACGAAGGGACAGTGAATTTTAGTGGCAGTTTAgccatatacatatttaattgcCGTTGCAAGCAAAGAATTCAGAAACTTTGCTCTTCATAAGATTAAATTCCCCATAGTAGTGAGGTTATGAAGATATGTTGTTTCTCAGCTTTATTTAATTCAGTCATGGATGTGCGTATGCTAATATGAATGGCAGTGAATGATGAAATCACCCATGAGAGGAGAGGGAGGGGAGGAATCAGTGAATGATCTGGACCCTACTTTCCCGCTtgactgtatttattttcagtCCATGGACATGGTTTCCTTAACTTGGCCCTGAATGAAACAGGATCAAAATAgtaattttaatagattttaataaatgttatatgtacatttttaataaactcaGCATTTGCCCtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272661 lncRNA upstream 63628 29484940 ~ 29485686 (+) True G200785
TU272652 lncRNA upstream 81787 29462161 ~ 29467527 (+) False G200780
TU272650 lncRNA upstream 82157 29462161 ~ 29467157 (+) True G200780
TU272429 lncRNA upstream 530217 29018573 ~ 29019097 (+) True G200628
TU272200 lncRNA upstream 767280 28770134 ~ 28782034 (+) True G200511
TU272702 lncRNA downstream 40137 29593020 ~ 29593537 (+) True G200799
TU272708 lncRNA downstream 83238 29636121 ~ 29640007 (+) False G200803
TU272707 lncRNA downstream 84131 29637014 ~ 29640007 (+) True G200803
XR_002651721.1 lncRNA downstream 121903 29674786 ~ 29744233 (+) False LOC111195537
XR_002651722.1 lncRNA downstream 121903 29674786 ~ 29708076 (+) False LOC111195537
XM_007245713.3 mRNA upstream 25444 29519533 ~ 29523870 (+) True rpl11
XM_022683299.1 mRNA upstream 31854 29511703 ~ 29517460 (+) True LOC103045125
XM_022683300.1 mRNA upstream 31854 29511703 ~ 29517460 (+) False LOC103045125
XM_015604893.2 mRNA upstream 41961 29500361 ~ 29507353 (+) True LOC103044302
XM_007245711.3 mRNA upstream 49211 29496100 ~ 29500103 (+) True LOC103044018
XM_007245719.3 mRNA downstream 1353 29554236 ~ 29557533 (+) True pithd1
XM_015604908.2 mRNA downstream 5666 29558549 ~ 29568075 (+) False lypla2
XM_007245718.3 mRNA downstream 5829 29558712 ~ 29568075 (+) True lypla2
XM_007245721.3 mRNA downstream 17195 29570078 ~ 29600164 (+) True LOC103046858
XM_007245722.3 mRNA downstream 17195 29570078 ~ 29600164 (+) False LOC103046858
TU271959 other upstream 1353116 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 1565964 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1730664 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 2058284 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 2059178 27490043 ~ 27490136 (+) True trnai-uau_8
TU273012 other downstream 1457043 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 1459828 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 1877664 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 1878068 31430951 ~ 31431023 (+) True trnar-acg_20
trnaq-cug_18 other downstream 1878358 31431241 ~ 31431312 (+) True trnaq-cug_18