RNA id: TU272778


Basic Information

Item Value
RNA id TU272778
length 396
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G200864
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 30349365 ~ 30393273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCTCTGGAAAGCttcctCAGATGTGGTAGGTGTAGCAGAATTGAGACTGGTGGCTCATGGGaatcacacatgcacacacacacacaggaactgGAGGACGCACAATTCCTTCTGCATAAACAGCATGAGCACAGTTAACACCTGCAGCCAAACACAGCTCCCTCTCAGTCTCCTGCACCCGGCGATAAACTCCTCTAAATTCATTAAAACTCGGTTTACACAAGAAAATATTACTACAGATATGCCCCCCACAGTCCTGGGCACATACTCTAAGATAGAGGTTTACATTCAGTCAGTTTAACAGCTTTACAACTgtggaaataaagaaacaaacactcCTCTGACCGGTAACTCCTCCACTGCACCGGCTGCAGGTGTAGCACTAATTAAAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272754 lncRNA upstream 470964 29873510 ~ 29878401 (+) True G200840
XR_002651721.1 lncRNA upstream 605132 29674786 ~ 29744233 (+) False LOC111195537
XR_002651722.1 lncRNA upstream 641289 29674786 ~ 29708076 (+) False LOC111195537
XR_002651720.1 lncRNA upstream 646370 29674786 ~ 29702995 (+) False LOC111195537
XR_002651719.1 lncRNA upstream 648762 29674786 ~ 29700603 (+) True LOC111195537
TU272784 lncRNA downstream 6973 30400246 ~ 30400752 (+) True G200869
TU272943 lncRNA downstream 91385 30484658 ~ 30488504 (+) True G200971
TU272982 lncRNA downstream 347405 30740678 ~ 30740930 (+) True G201004
TU272984 lncRNA downstream 349486 30742759 ~ 30743450 (+) True G201006
TU272986 lncRNA downstream 354730 30748003 ~ 30748202 (+) True G201008
XM_022682872.1 mRNA upstream 99510 30248587 ~ 30249855 (+) True LOC111195487
XM_022683305.1 mRNA upstream 696544 29646768 ~ 29652821 (+) False LOC103022546
XM_007245735.3 mRNA downstream 578130 30971403 ~ 30974511 (+) True utp23
XM_015604911.2 mRNA downstream 585477 30978750 ~ 30985844 (+) True aard
XM_007245743.3 mRNA downstream 662747 31056020 ~ 31062482 (+) True stmnd1
XM_015604909.2 mRNA downstream 676233 31069506 ~ 31084633 (+) True rbm24
XM_007245750.2 mRNA downstream 704626 31097899 ~ 31133970 (+) True cap2
TU272690 other upstream 796482 29551136 ~ 29552883 (+) False eloa
TU271959 other upstream 2153167 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 2366015 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 2530715 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 2858335 27490937 ~ 27491030 (+) True trnai-uau_9
TU273012 other downstream 616653 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 619438 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 1037274 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 1037678 31430951 ~ 31431023 (+) True trnar-acg_20
trnaq-cug_18 other downstream 1037968 31431241 ~ 31431312 (+) True trnaq-cug_18

Expression Profile