RNA id: TU273026


Basic Information

Item Value
RNA id TU273026
length 294
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G201030
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31005632 ~ 31005925 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctgacctgtttataatgtaatccgagcagtgcctccgtgacgctgctctaaactgctgctgttagctgctcgggctgaaagatgaactgtagagagctgtattatccggttagtggggttattttatttcatacacagaagaacttaaaaatttcaaaacgctccagacaggctcagctgagtcctgtagcccgtggctgggctgtagctctgactaagcaaagactgcgggcttgtggtgctgcagctgcagctccgactagtggttggatgaggaactgctaaatctgagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272988 lncRNA upstream 195406 30809995 ~ 30810226 (+) True G201010
TU272986 lncRNA upstream 257430 30748003 ~ 30748202 (+) True G201008
TU272984 lncRNA upstream 262182 30742759 ~ 30743450 (+) True G201006
TU272982 lncRNA upstream 264702 30740678 ~ 30740930 (+) True G201004
TU272943 lncRNA upstream 517128 30484658 ~ 30488504 (+) True G200971
TU273011 lncRNA downstream 4001 31009926 ~ 31084604 (+) False rbm24
TU273008 lncRNA downstream 12679 31018604 ~ 31029889 (+) True G201019
TU273150 lncRNA downstream 254020 31259945 ~ 31262960 (+) True G201135
TU273187 lncRNA downstream 435520 31441445 ~ 31445123 (+) False G201163
TU273188 lncRNA downstream 435520 31441445 ~ 31451756 (+) True G201163
XM_015604911.2 mRNA upstream 19788 30978750 ~ 30985844 (+) True aard
XM_007245735.3 mRNA upstream 31121 30971403 ~ 30974511 (+) True utp23
XM_022682872.1 mRNA upstream 755777 30248587 ~ 30249855 (+) True LOC111195487
XM_022683306.1 mRNA upstream 1352811 29646768 ~ 29652821 (+) False LOC103022546
XM_007245743.3 mRNA downstream 50095 31056020 ~ 31062482 (+) True stmnd1
XM_015604909.2 mRNA downstream 63581 31069506 ~ 31084633 (+) True rbm24
XM_007245750.2 mRNA downstream 91974 31097899 ~ 31133970 (+) True cap2
XM_022683326.1 mRNA downstream 92398 31098323 ~ 31133970 (+) False cap2
XM_007245747.3 mRNA downstream 135913 31141838 ~ 31149221 (+) True vps28
TU272690 other upstream 1452749 29551136 ~ 29552883 (+) False eloa
TU271959 other upstream 2809434 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 3022282 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 3186982 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 3514602 27490937 ~ 27491030 (+) True trnai-uau_9
TU273012 other downstream 4001 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 6786 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 424622 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 425026 31430951 ~ 31431023 (+) True trnar-acg_20
trnaq-cug_18 other downstream 425316 31431241 ~ 31431312 (+) True trnaq-cug_18

Expression Profile