RNA id: TU273633


Basic Information

Item Value
RNA id TU273633
length 276
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G201480
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33363047 ~ 33363322 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtttcatggctaaatagagcagcctggtgttcaatctttcaaaattaattacacattgcaccaataagagcagagtgtgaaggttcaattagcagggtaagagcacttttttttcacagttttgctcaaaatattgcaatgcacacaacattatgggtgacataccagagttcagaagaggacaaattgttggtgcacgtctttctGGTGcctctgtgaccaagacagcaagtctttgtgatgtatcaagagccacagtatctagggtaatgtcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273630 lncRNA upstream 39068 33323607 ~ 33323979 (+) True G201477
TU273573 lncRNA upstream 307578 32969617 ~ 33055469 (+) True G201453
TU273588 lncRNA upstream 375076 32987145 ~ 32987971 (+) True G201457
TU273575 lncRNA upstream 390321 32971286 ~ 32972726 (+) True G201454
TU273569 lncRNA upstream 398488 32963411 ~ 32964559 (+) True G201451
TU273641 lncRNA downstream 35981 33399303 ~ 33412286 (+) True G201485
TU273796 lncRNA downstream 61389 33424711 ~ 33424912 (+) True G201606
TU273798 lncRNA downstream 64136 33427458 ~ 33427671 (+) True G201608
TU273799 lncRNA downstream 64524 33427846 ~ 33429381 (+) True G201609
TU273805 lncRNA downstream 83823 33447145 ~ 33447383 (+) True G201615
XM_007247805.3 mRNA upstream 14379 33334726 ~ 33348668 (+) True LOC103025781
XM_007247822.3 mRNA upstream 144211 33099446 ~ 33218836 (+) True tnrc18
XM_007247823.3 mRNA upstream 144211 33099446 ~ 33218836 (+) False tnrc18
XM_022683370.1 mRNA upstream 144211 33099446 ~ 33218836 (+) False tnrc18
XM_007247824.3 mRNA upstream 144211 33099446 ~ 33218836 (+) False tnrc18
XM_007259709.3 mRNA downstream 448110 33811432 ~ 33814986 (+) True psmg3
XM_007259710.3 mRNA downstream 448110 33811432 ~ 33814986 (+) False psmg3
XM_022683371.1 mRNA downstream 454209 33817531 ~ 33884645 (+) True tmem184a
XM_022682875.1 mRNA downstream 576112 33939434 ~ 33998741 (+) True ints1
XM_022683373.1 mRNA downstream 652380 34015702 ~ 34024202 (+) True LOC103027444
TU273611 other upstream 88140 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 88140 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 385182 32974320 ~ 32977865 (+) False bud31
TU273580 other upstream 385182 32974368 ~ 32977865 (+) False bud31
TU273558 other upstream 435128 32923528 ~ 32927919 (+) True G201445
TU273913 other downstream 448139 33811461 ~ 33814984 (+) False psmg3
TU274673 other downstream 3226126 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 3514501 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 3621744 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile