RNA id: TU273798


Basic Information

Item Value
RNA id TU273798
length 214
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G201608
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33427458 ~ 33427671 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtctcttaattttttagagctatatatatataaaacactatcTAACACGTCAACTTTCAACAGATTTTTTTCCAATACATTTGGAGCATTTGTCCTGATCTAGTCATCCTGGTGCAGTGTTAAGAAAAACTGCTAGATTAcacttcaaaaaatatatatatatattaagtgcGAAATACACAGTTTAGTGGGGGATAGTTATcatgcattttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273796 lncRNA upstream 2546 33424711 ~ 33424912 (+) True G201606
TU273641 lncRNA upstream 15172 33399303 ~ 33412286 (+) True G201485
TU273633 lncRNA upstream 64136 33363047 ~ 33363322 (+) True G201480
TU273630 lncRNA upstream 103479 33323607 ~ 33323979 (+) True G201477
TU273588 lncRNA upstream 439487 32987145 ~ 32987971 (+) True G201457
TU273799 lncRNA downstream 175 33427846 ~ 33429381 (+) True G201609
TU273805 lncRNA downstream 19474 33447145 ~ 33447383 (+) True G201615
TU273811 lncRNA downstream 59327 33486998 ~ 33487376 (+) True G201621
TU273813 lncRNA downstream 60763 33488434 ~ 33488663 (+) True G201623
TU273822 lncRNA downstream 73835 33501506 ~ 33502030 (+) True G201632
XM_007247805.3 mRNA upstream 78790 33334726 ~ 33348668 (+) True LOC103025781
XM_007247822.3 mRNA upstream 208622 33099446 ~ 33218836 (+) True tnrc18
XM_007259709.3 mRNA downstream 383761 33811432 ~ 33814986 (+) True psmg3
XM_007259710.3 mRNA downstream 383761 33811432 ~ 33814986 (+) False psmg3
XM_022683371.1 mRNA downstream 389860 33817531 ~ 33884645 (+) True tmem184a
XM_022682875.1 mRNA downstream 511763 33939434 ~ 33998741 (+) True ints1
XM_022683373.1 mRNA downstream 588031 34015702 ~ 34024202 (+) True LOC103027444
TU273611 other upstream 152551 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 152551 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 449593 32974320 ~ 32977865 (+) False bud31
TU273580 other upstream 449593 32974368 ~ 32977865 (+) False bud31
TU273558 other upstream 499539 32923528 ~ 32927919 (+) True G201445
TU273913 other downstream 383790 33811461 ~ 33814984 (+) False psmg3
TU274673 other downstream 3161777 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 3450152 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 3557395 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile