RNA id: TU273822


Basic Information

Item Value
RNA id TU273822
length 525
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G201632
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33501506 ~ 33502030 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaagaaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaaacataaaaccacagctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtggtctaaaaccaggtgtttcagtttcattgtccaacccctgtaaagaTAAAGGTTGTCTACAGTATGTCACCTACCGTACATCTAAATCTCATTGACAATGGCCAATCCTATAATCCAATGTTTAGGCAGCATGTGACTGAAGGGGGTTGCAAAGGGGGGGTGGCAACTGCCCCCTCTAGTTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273813 lncRNA upstream 12843 33488434 ~ 33488663 (+) True G201623
TU273811 lncRNA upstream 14130 33486998 ~ 33487376 (+) True G201621
TU273805 lncRNA upstream 54123 33447145 ~ 33447383 (+) True G201615
TU273799 lncRNA upstream 72125 33427846 ~ 33429381 (+) True G201609
TU273798 lncRNA upstream 73835 33427458 ~ 33427671 (+) True G201608
TU273861 lncRNA downstream 61932 33563962 ~ 33564176 (+) True G201670
TU273888 lncRNA downstream 104360 33606390 ~ 33606781 (+) True G201694
TU273890 lncRNA downstream 107866 33609896 ~ 33610351 (+) True G201696
TU273893 lncRNA downstream 156315 33658345 ~ 33658591 (+) True G201699
TU273898 lncRNA downstream 168052 33670082 ~ 33670291 (+) True G201704
XM_007247805.3 mRNA upstream 152838 33334726 ~ 33348668 (+) True LOC103025781
XM_007247822.3 mRNA upstream 282670 33099446 ~ 33218836 (+) True tnrc18
XM_007259709.3 mRNA downstream 309402 33811432 ~ 33814986 (+) True psmg3
XM_007259710.3 mRNA downstream 309402 33811432 ~ 33814986 (+) False psmg3
XM_022683371.1 mRNA downstream 315501 33817531 ~ 33884645 (+) True tmem184a
XM_022682875.1 mRNA downstream 437404 33939434 ~ 33998741 (+) True ints1
XM_022683373.1 mRNA downstream 513672 34015702 ~ 34024202 (+) True LOC103027444
TU273611 other upstream 226599 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 226599 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 523641 32974320 ~ 32977865 (+) False bud31
TU273580 other upstream 523641 32974368 ~ 32977865 (+) False bud31
TU273558 other upstream 573587 32923528 ~ 32927919 (+) True G201445
TU273913 other downstream 309431 33811461 ~ 33814984 (+) False psmg3
TU274673 other downstream 3087418 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 3375793 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 3483036 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile