RNA id: TU273861


Basic Information

Item Value
RNA id TU273861
length 215
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G201670
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 33563962 ~ 33564176 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tacatctggcccgcaattcaatttaattatttatgctttattatgttcgttttcatattttatcttaacttgtattttggtgtgtgtgtgtggttttttttttttttttttttgcttacgctgcgttgcctgctttagtagtcttcagtagccttcaacagtctaaccttgctgccgtggtgtgtccactaaactccgtagttataaacatcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273822 lncRNA upstream 61932 33501506 ~ 33502030 (+) True G201632
TU273813 lncRNA upstream 75299 33488434 ~ 33488663 (+) True G201623
TU273811 lncRNA upstream 76586 33486998 ~ 33487376 (+) True G201621
TU273805 lncRNA upstream 116579 33447145 ~ 33447383 (+) True G201615
TU273799 lncRNA upstream 134581 33427846 ~ 33429381 (+) True G201609
TU273888 lncRNA downstream 42214 33606390 ~ 33606781 (+) True G201694
TU273890 lncRNA downstream 45720 33609896 ~ 33610351 (+) True G201696
TU273893 lncRNA downstream 94169 33658345 ~ 33658591 (+) True G201699
TU273898 lncRNA downstream 105906 33670082 ~ 33670291 (+) True G201704
TU273902 lncRNA downstream 140170 33704346 ~ 33704880 (+) True G201708
XM_007247805.3 mRNA upstream 215294 33334726 ~ 33348668 (+) True LOC103025781
XM_007247822.3 mRNA upstream 345126 33099446 ~ 33218836 (+) True tnrc18
XM_007259709.3 mRNA downstream 247256 33811432 ~ 33814986 (+) True psmg3
XM_007259710.3 mRNA downstream 247256 33811432 ~ 33814986 (+) False psmg3
XM_022683371.1 mRNA downstream 253355 33817531 ~ 33884645 (+) True tmem184a
XM_022682875.1 mRNA downstream 375258 33939434 ~ 33998741 (+) True ints1
XM_022683373.1 mRNA downstream 451526 34015702 ~ 34024202 (+) True LOC103027444
TU273611 other upstream 289055 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 289055 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 586097 32974320 ~ 32977865 (+) False bud31
TU273580 other upstream 586097 32974368 ~ 32977865 (+) False bud31
TU273558 other upstream 636043 32923528 ~ 32927919 (+) True G201445
TU273913 other downstream 247285 33811461 ~ 33814984 (+) False psmg3
TU274673 other downstream 3025272 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 3313647 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 3420890 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile