RNA id: TU274059


Basic Information

Item Value
RNA id TU274059
length 355
lncRNA type intronic
GC content 0.37
exon number 2
gene id G201830
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 34307975 ~ 34309433 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taccttatactaccatatactaccttatactaccctatacttccctataccaCGCTATAGTACCCTATGCTACTACTCAATACTCCCATATACTACACAACACTCTATATACTACCCTAACTACTCtgaactaccctatactctatactaccatatacttccCTTCACTTTCTATACTatcctgtactaccctatactactctatactccctatactaacatatactaccttatactaccctatccTTCTTATACCACTCTATAGTACCCTATACCCTATGCTACTACTCAATACTCCCATATACTACACaacactctctatactaccctatactactctgaactaccctatact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274021 lncRNA upstream 113734 34161445 ~ 34194241 (+) True G201805
TU274013 lncRNA upstream 229224 34078541 ~ 34078751 (+) True G201800
TU273994 lncRNA upstream 282522 34024322 ~ 34025453 (+) True G201786
TU273918 lncRNA upstream 400497 33816101 ~ 33907478 (+) True G201722
TU273921 lncRNA upstream 435438 33871849 ~ 33872537 (+) True G201725
TU274085 lncRNA downstream 92164 34401597 ~ 34401908 (+) True G201851
TU274049 lncRNA downstream 96188 34405621 ~ 34408905 (+) False G201824
TU274052 lncRNA downstream 98533 34407966 ~ 34422325 (+) True G201824
TU274093 lncRNA downstream 124608 34434041 ~ 34436093 (+) True G201859
TU274108 lncRNA downstream 160873 34470306 ~ 34547849 (+) True G201872
XM_007247812.3 mRNA upstream 36644 34256564 ~ 34271331 (+) True arpc1b
XM_007247811.3 mRNA upstream 51859 34246152 ~ 34256116 (+) True arpc1a
XM_022683374.1 mRNA upstream 63956 34206852 ~ 34244019 (+) True LOC103025280
XM_022682876.1 mRNA upstream 231462 34034500 ~ 34076513 (+) True micall2
XM_022683373.1 mRNA upstream 283773 34015702 ~ 34024202 (+) True LOC103027444
XM_022682877.1 mRNA downstream 796605 35106038 ~ 35124618 (+) True LOC111195488
XM_022683380.1 mRNA downstream 834842 35144275 ~ 35237634 (+) True card11
XM_022683381.1 mRNA downstream 834842 35144275 ~ 35237634 (+) False card11
XM_007247801.3 mRNA downstream 953637 35263070 ~ 35336079 (+) True gna12
XM_022683383.1 mRNA downstream 1047320 35356753 ~ 35372601 (+) False eif3b
TU273913 other upstream 492991 33811461 ~ 33814984 (+) False psmg3
TU273611 other upstream 1033068 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 1033068 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 1330110 32974320 ~ 32977865 (+) False bud31
TU274673 other downstream 2280015 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 2568390 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 2675633 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile