RNA id: TU274146


Basic Information

Item Value
RNA id TU274146
length 203
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G201902
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 35027900 ~ 35028205 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtagaaggtagttagttagaggtgttaggagagtaagggctctttgaagagctctgtcttcaggagtttattaaagatagtgagagattctcctgatctggtagtagaaggtagttagttagaggtgttaggagagtaagggctctttgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274131 lncRNA upstream 113916 34823772 ~ 34913984 (+) True G201888
TU274136 lncRNA upstream 174672 34831061 ~ 34853228 (+) True G201892
TU274129 lncRNA upstream 199378 34822847 ~ 34828522 (+) True G201887
TU274123 lncRNA upstream 208239 34771530 ~ 34819661 (+) True G201884
TU274113 lncRNA upstream 459261 34497235 ~ 34568639 (+) True G201875
TU274306 lncRNA downstream 66971 35095176 ~ 35097121 (+) True G202041
TU274308 lncRNA downstream 70873 35099078 ~ 35100435 (+) True G202043
TU274311 lncRNA downstream 80389 35108594 ~ 35108823 (+) True G202046
TU274317 lncRNA downstream 87665 35115870 ~ 35117448 (+) False LOC111195488
TU274327 lncRNA downstream 137911 35166116 ~ 35166712 (+) True G202060
XM_007247814.3 mRNA upstream 706041 34286087 ~ 34321859 (+) True mmd2
XM_007247812.3 mRNA upstream 756569 34256564 ~ 34271331 (+) True arpc1b
XM_007247811.3 mRNA upstream 771784 34246152 ~ 34256116 (+) True arpc1a
XM_022683374.1 mRNA upstream 783881 34206852 ~ 34244019 (+) True LOC103025280
XM_022682876.1 mRNA upstream 951387 34034500 ~ 34076513 (+) True micall2
XM_022682877.1 mRNA downstream 77833 35106038 ~ 35124618 (+) True LOC111195488
XM_022683380.1 mRNA downstream 116070 35144275 ~ 35237634 (+) True card11
XM_022683381.1 mRNA downstream 116070 35144275 ~ 35237634 (+) False card11
XM_007247801.3 mRNA downstream 234865 35263070 ~ 35336079 (+) True gna12
XM_022683383.1 mRNA downstream 328548 35356753 ~ 35372601 (+) False eif3b
TU273913 other upstream 1212916 33811461 ~ 33814984 (+) False psmg3
TU273611 other upstream 1752993 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 1752993 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 2050035 32974320 ~ 32977865 (+) False bud31
TU274673 other downstream 1561243 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 1849618 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 1956861 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile