RNA id: TU274602


Basic Information

Item Value
RNA id TU274602
length 2993
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G202270
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36243616 ~ 36246643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTGATTGGTTCATTTAGTTCATCGCCACAGTTCAAGTTCGTATCGTATAGTTTTTAAGATCCTCCAacgcacacacagcacacaataAATTCACCCCGAGGGTCTGAAACGTCTGCACGGGTGTTCCCTTTTCCTTTATTTCACAGTAGTTGTCTGAAAGCAGATAACATagtaataagaaataaaaaaaaacactttattgtgCTCTTGGTTGTCTCTGGATGTAGGTCAGAGACAGCTGCTTTCGTTCACATTGTCCAAACAATtctaacgttttttttttttatgagataTAGGAGTGCTACAATATGCAATATAAAACATGTAGGTTACTCGCTAGATTGCCTATAAATCGGACAGCTCTCAGAATCTATTGAAatgctctttttaaaaaaaatgacaacaaaatgaagacttttttttttcttttccaaaaaacatcaacacttgaaagaaaaagaaaaaatacagttataCATATATTCCAGAATTTTAAGGCGGTTGAAATAAGAAATCGGATGTCCCAGTCACTTCCTGTAACACTTCCTGTTCAGGTGATGTACAAATCCAGTGGTGTCATGTCAGGTCAGGTCAGGGTAGGaggaaatcaggaaatcagtctctctttctttctttttctctcgttCTATCTCTTTATTCGTGCACTCTGTAGTCTTTCTTCCACGACTGATGCTCTGGATTCAGCAGAACCGATACCTTCCCCAATCGGCCACTTTCAACATTTACAAAAGCGTTTGCCGAGAGTCTGCCGAGCAGTAAAACAGCAGTAGAAAACACCTAAATGGAGCCCATAGATCTATTAGAAATGTCTATTCTATTCCTTTTGATTGTGGAACTGGTTGGTTTACTGGTTGGTACCGTCACTGGTCCAGGGGCTGAAAGAGAACTGGCCAGTGAATAGGAATAAGAAACATGCAGCTGTGAAAAGCGCCGCATCATACCTTCATagactgtatgtaatacattCATCCTCAGGGCTGGAGAAGAGAAGCAGGAGCAGAAGAAACATCTGCAGGGAAATGGGATGAGCTGCCACCCTTTGGTTGACCACCAGATACTGTGTAAAACTGTATGTCAGTATTACGGTAgtcttcaaaaaataaaaatacattaaaataatataaaaataaaaatagggcCAAATGGGAAGATGACTAAtgggcaaaacattaaaaaaaattgtaaactgCAAAATGTATGAAATTGAATTGATTTCACTGAGAAGGTGTTTTATCTGTGTTATCACGGTCATGTCTCTTCAGCCAGTCATTTATCAATtacatatcaatatttttatggtTCATACTCTTTCCCAGTCTAAAGGCACATTCACAGcaagtacagttttttttcagagtAGTAGAATCTTAATACTCAGTTTTAATAGAGTTTTAATACTCAATGGGCcccattttagtgatctatagcgtcCAATCAATCAATTACGCATCGCACAGCAATATTAAGGGTGTATCGATGTGTATTTGCTattgtgagggtgcaaaaaaatacgccttgccagctcaaaatgtgcaaaaggcatgagcttattctctaaattaatctaaattaaagCGTGTGTTTTGGGATTAACttataaaactaataaactaatcagtgtgtcactttttattccctttaagaggcaggtgagctctgactttggcgttttttctttttttttttttacttaacagcgcagtgcttttGCACGTCTAAGCAAAAAAACCTGACCTGCGTGTTCAAGCTGTAAAAGTTTGTCAGCAGTTCTTTTAACGgaaaagcaatgttattttattctttattatgtttattgttgatggttttaatcggtcagtggcgcacctgtattttcttGCCGCCCAGATAGAAACACTATTTTAAAGGCGCAGGAAGAAGGTAGGCGGGAAAATAGACTTGTTAAgggggtgtaagataacaaGGAGCATCGTGACATGCCTTGTGCCGTGTGTAGCCTACGTTAGGGAACAAGTCTGTAAATATGGCTAGAAACTTCACAGCTATCATAAGTTCCCACTCTTTCGTTTTCTCTAATGCCTTTCCACATTGCTTTTAACCCATTACACACATTAATTACACCAGATTTagcaaatgttttcttttttctttttattattttaaataatagtgTAAATAGCCACTAtctataaatgtgtttgttggTTTTCAAAACTTGATATGCTTTTTTGTCGTCTGAAAAAACAGGACTTGGTGTGAAATTGCATTTAAACTGCGTCATTCAGATGTCTCTAAAAGACCAATCTCTCTCACTATGTCATTACAACacacatatgtatatatatatatatataagtacacAACCTGCCCTGTCTTCTCCAAGTTTGTAATATTGTGCATTTTGTTTGGTgacatgaataaagaaaataacaaaagcaGGCTTAGAATTAAGGTCAATTTGAGGGGGAAAGAAATCCACCATTCCAGAAACCAGTGCAATTTTACCCATCATGACACTCAAACATTCATTTAGAACAAATAATATCACAGGAGCTGACTCCAAAAATCCATGATCTAAACCTGAATCATacatgtcatatatatatatttctcttctTTTAACCAGCAAACCTTGCAAATATAGAAACACTGTCTGTACATTAGTCCCTTTGTATTTATAACtcaaatatatagagagaacTGTTCATTAATTAGTGTACAGTGAGAAGAAATACAAAGTTTTCAGAAGATGTCTGTCGTTgtagttttctctctcttttttttttttttcttgttttttgtttgtttcctcACCGTACACAGTAGCAAATCCAGTGTCACAGGACTTGGCCATGCGGAACCAAATACTTGTAATCCACTTGAACATAGATATTTTAAATTGGAGGTGTGTTCTCTTCTTGTTGATTAAAGTATTAAATGTCCTTTAATTTTGGTAAACTCACAAAACTAACTTTTATTCCCTATAGCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274596 lncRNA upstream 76221 36158978 ~ 36167395 (+) False G202268
TU274584 lncRNA upstream 134782 36108575 ~ 36108834 (+) True G202259
TU274557 lncRNA upstream 209900 36033440 ~ 36033716 (+) True G202238
TU274553 lncRNA upstream 279571 35963798 ~ 35964045 (+) True G202234
TU274520 lncRNA upstream 345210 35897781 ~ 35898406 (+) True G202208
TU274641 lncRNA downstream 162937 36409580 ~ 36470249 (+) True G202307
TU274645 lncRNA downstream 269005 36515648 ~ 36515928 (+) True G202311
TU274683 lncRNA downstream 425348 36671991 ~ 36672416 (+) True G202341
XR_002651727.1 lncRNA downstream 634717 36881360 ~ 36914738 (+) True LOC111195542
XR_002651726.1 lncRNA downstream 634724 36881367 ~ 36914738 (+) False LOC111195542
XM_007247794.3 mRNA upstream 425030 35811037 ~ 35818586 (+) True mrm2
XM_007247796.3 mRNA upstream 444616 35775031 ~ 35799000 (+) False snx8
XM_007247797.3 mRNA upstream 447036 35775028 ~ 35796580 (+) True snx8
XM_007247803.3 mRNA upstream 627805 35601601 ~ 35615811 (+) True lfng
XM_007247802.3 mRNA upstream 857531 35377651 ~ 35386085 (+) True chst12
XM_022683389.1 mRNA downstream 319564 36566207 ~ 36580371 (+) True zfand2a
XM_022683388.1 mRNA downstream 319564 36566207 ~ 36580371 (+) False zfand2a
XM_007232066.2 mRNA downstream 319564 36566207 ~ 36573094 (+) False zfand2a
XM_007232068.3 mRNA downstream 405191 36651834 ~ 36677922 (+) True LOC103040671
XM_007232070.3 mRNA downstream 705264 36951907 ~ 36973852 (+) True zc3h7a
TU273913 other upstream 2428632 33811461 ~ 33814984 (+) False psmg3
TU273611 other upstream 2968709 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 2968709 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 3265751 32974320 ~ 32977865 (+) False bud31
TU274673 other downstream 342805 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 631180 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 738423 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile