RNA id: TU274740


Basic Information

Item Value
RNA id TU274740
length 1344
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC103041887
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 36983323 ~ 36993332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTGACTGAAGGCGGAACTGGAGAAACGCTGTGAAAACAGACGGAGATGAAAAACTAGAGAAATATACTTTAATTCCCTCATCTGAAGCTCTTCTACACAGCCTCCAGGGATGGCCAGCGCTCCTCCTATGGAGATCATGGGTCCGACGGGACAGGCAGCTCCCTGCCCACCGACTTATGAAGAGTCTGTGAACGCAGGAACGCCGTTCCCCCCCGGGGCTCATATGCCCCCCTCCGCCTGTCTACAGCAAGGCCCCCCAACCCCCCTACCCAGCCCAGGGCTACACCCAGATGTActcacctccacctcctcccaCTGGACCTGGAGCTCCTGTGGTGACTGTGCAGACCGTATATGTGCAGCCTGGCATGGTGTTCGGGCACACTCCAGTGCAGGTCCACTGCCCTAACTGTGCCCAGACTGTAGTGACCCGTTTGGATTACTCTTCAGGCACTATGACCTGGCTGACCTGCGCAGGACTCTTCATTTTTGGCTGTATCTACGGCTGCTGTCTGATCCCGTTCTGCGTGGACAGCCTGAAGGATGTGACACACCACTGCCCCAACTGCAGCAGTGTTCTAGGAGTCTTCAAACGACTCTGATGTGGCTGTGTGGTGCGCTGTGACTAACCATATATACCTGTACACTTTCATCATTCCTTATCTTTCTTATTACTGCAAacgtgaaaatgtaaaaatatgataatataaaaaaaaacgcgtcaggaaaaatatatttaccgaaatatttattttaatcaatgaGCCAGGTATCAGGtcagtacattttataaaaataaaaaaatagcttagCATTTATTTAGATATCAAATTCCCTTCtttgtcaaaatataatgcTTTTTCTTGCACTGCAACCAATCAAGTTACACTGTATCTGTGTAGTCCCATTAGTTTGGGTTTATTTGTTGCACACTGCCGTCTAAAGTGCTTTAGTCATCAtatatgtgggcggagtctccttATACATCACACAGATTGTTTTTTAGAATGTGGCCAATTCAGTTTgttgcctttccaggtgttgtacTAAATTTATACTCTCTCTCTGCCAAAATCTTACTCCCTACGAGTGCAGATGCGATAacagttaatctacagttacagtagatacagaatcaacaacaatgtaatctgttgtacccgtccTGCTACCTGtcgattttggcacaacaccgcttcttttTTtgtttaatgctgttttatcACTGTGCCATTCAGTAATCACATGTTATAAAAAGTTATGTTTATCTACACAGGGTTCTGTCCACTGCATTTGTAATCTCTGTGCACTTCTGCTGATAATTAAAGTAATAATCTGCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651727.1 lncRNA upstream 70328 36881360 ~ 36914738 (+) True LOC111195542
XR_002651726.1 lncRNA upstream 70328 36881367 ~ 36914738 (+) False LOC111195542
TU274710 lncRNA upstream 70371 36881488 ~ 36914695 (+) False LOC111195542
TU274683 lncRNA upstream 312650 36671991 ~ 36672416 (+) True G202341
TU274645 lncRNA upstream 469138 36515648 ~ 36515928 (+) True G202311
TU274741 lncRNA downstream 37897 37031223 ~ 37032350 (+) True G202394
TU274747 lncRNA downstream 44062 37037388 ~ 37037645 (+) True G202400
TU274755 lncRNA downstream 66192 37059518 ~ 37060161 (+) True G202405
TU274756 lncRNA downstream 67929 37061255 ~ 37063186 (+) True G202406
TU274874 lncRNA downstream 141400 37134726 ~ 37134983 (+) True G202483
XM_007232070.3 mRNA upstream 11214 36951907 ~ 36973852 (+) True zc3h7a
XM_015600976.2 mRNA upstream 11214 36951907 ~ 36973852 (+) False zc3h7a
XM_007232068.3 mRNA upstream 307144 36651834 ~ 36677922 (+) True LOC103040671
XM_022683389.1 mRNA upstream 404695 36566207 ~ 36580371 (+) True zfand2a
XM_022683388.1 mRNA upstream 404695 36566207 ~ 36580371 (+) False zfand2a
XM_022683398.1 mRNA downstream 17369 37010695 ~ 37025525 (+) True LOC103045472
XM_022683405.1 mRNA downstream 94875 37088201 ~ 37096868 (+) True nsmce1
XM_007237381.3 mRNA downstream 1014195 38007521 ~ 38058413 (+) True LOC103021790
XM_022683408.1 mRNA downstream 1014195 38007521 ~ 38058413 (+) False LOC103021790
TU274673 other upstream 44787 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other upstream 107172 36877823 ~ 36877894 (+) True trnat-cgu_1
TU273913 other upstream 3170082 33811461 ~ 33814984 (+) False psmg3
TU273611 other upstream 3710159 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 3710159 33267043 ~ 33274907 (+) True G201466

Expression Profile