RNA id: XM_007230788.3


Basic Information

Item Value
RNA id XM_007230788.3
length 5363
RNA type mRNA
GC content 0.53
exon number 15
gene id cdk12
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11200297 ~ 11239603 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacagacgaAAAAACAACGAACACAACCAACCGCTGCTTCCAGGGGGCGGGACCATGTCTGTTTTGATTGGATATCGTCAAGTAACGATGAAGACTGATAGGCTTGCAGGTTACCGAAGAAACGGAACTGATAGACAAGTACGATGCGTCCCAGATCGCTCCTTGTTGCCTACATAGTGCGCAATGATAGTACTGAAACCTAGTCTTATACACAGAGACAGTTTAAAATTAGTTCTGAAATAGAGAAATATCTATCCACCTGTGGGTTTATCTTAAATGGCTGTTATTATTATACTCAGTTTGTGCTCAGGAGCcattatattattactaatGCATAATAATCATTTGTGCACTAAGTAGGGAGCAAGGAGCCGAATGGGATTGAGCCGAGCACGAAACGGCACAGAAATATTTAGACACAAGTAATAGCACATTTTCATAATAATAGGATAGATCATAAATCTGTGCAGACTTAAAAAACGTCTTATTCCACCTAAAACTGTGTTACTGTGAAGTTTagatatttgttttaatgtaaatcGGGTCCACGCTGACGTGTTACGTCAGTCTCTATGGTGACGGTCTCTCTGACAAAACCCAGCATGCGCAGGCGAGGGCGCGCAGTGCTAGCCTCAGCTACAATGGCCGACTCGGACCGCTAAATCAAAGGGCGGTGGACGGTGCTGAAATCCACCAACATCGCCCTAAACATTGGCCTTGTTTTCCTTTAAGAGCTGCTAAAATAAACTGGAATAAATTCTGTTCACGAATATATGATTATTTCCGACAAATATCCAAAACTTGATAGAGATTACAGAGTCtattaaaagagagagacaagcgAACATGTAAACAGAAACTAACCGGCTTTTAAGTTTTGGCTTTTCAGTTTGCAACAAAATACAGTCCCATTCATCATGGACTTTATTTGTTTCTGATTTTAAAAGATCGTTTGTTGAAGGAGACGAGCACCTGTCTAAAAAAAGACCTGGTGCTCACTCAAAAAGGAGACttttcgtctttttttttattttttgagaaaGAAGCTAGCTTGCttgctagcttagcttagctggctagctagctaaacagACGAGGAGAAAAGTACGCAGTGTTCtgatctttttctttctttttttcgcTAGCTGCGAGAAACACGATATATTAGAGCTCTAATAAATATATCTTTCTCAATTTCATcgatttaagttttttattttttggtttcaaAAGAGAAACGCATGCTGCTCCACTTGGCCGGGGATGAATTCTGGATACACCGTGAGCATAAACTAGGTccgtgtgggagagagagagagagagaaggagagggggCCGTGGCTGGGCTAAGGTAAGTTATGCCTGGATCAGACCGCCACCATGGGACCAAGAGGAAATCGGACGCGGAGTTCCAGCCCTCAGCCGCCGGCTTAACGAGCAAGGACGGCCGGCAGCAGGCTAAATCCCCCGCCTCGTCGTCTTCAGCTTCGTCCTCGAAGCACAAGCGCCCAAAGCCGTCCAGACACGGGCGAGATTCGGCTCCGGAGGCCTCGCTCGCTTCGCTACCCAGCGCCCCGGCTGTGAAGCCTCTGGTGGAGTACGACGACATAAGCTCGGACTCGGATACTTTCTTCGACACGCCGACCGCGGCCTCCAGGTCGGCGGAAAGGAGAGATGGCGAGCGCTTGGAGGTGGacggtggtggtggaggaggggcTGGGGGATCCAGAGACACCCGGACTCACAAACACAGGCGCTCCAGGAAGAAATCCAAAGACCCACACAGGGTGAGGGAGTCGGGGGAGGGGGGGGAAGCTATGAACAAGAAGAAAAGCAGTAAGGACCGAGATAGAGGAGGCAGAGAGGCCAAGAGGACGAGCAAAGAGAAGGACAGGGATAAGCACTCGTCAGCGCTGGGCCTTTCTTCAACATCTGCGGCCCTGAGGGCTGAAACGGGTGAGGCGGGCTCCGGTAAGCGGGCAGGCGCTGACCCCCTGACCTCTGCAGCGGCCCAGACTGGGAATGTAGTTGGCAGTGCTTCCTCTTCGGCCTCATCCGCCCGCAGCAAAGAAAGTGGGCGCTCCTCCTCCAAGTCCCATAAAGACAAGCAGAGGCGAGAAGGTGGTCGGTCCGAGCACTCGGACAGGGGTCACCACAAAGCCTCCAGAAGCCGCAGGTCCAGTCCCAAAGGGAAGCGCCACAGGACACTCAGCCAAAGCCCCAGTCCCCGGCGCGGGACGGGCAGTGCCCTGTCCCCTGTGGACCTGGAGGACGGCTACTCATCCAGGTGTAGGGCGGCCAGCCCCAGCCCGTACAGGGAGACGTCCAGGCGGAGCAGACAGAGGTCAGACAGCCCCTACGGCCGTCGGAGGTCCTCCAGCTATGAGAGGGACGGGAGCCCCTACGGTAACCGTCGCTCGTCCAGCACCAGCCCGGTGTCCAGGCGTTCCATTCGATCACGCAGCCGCTCTCCTCTCTACTTGTCCTCTCGCCGATCCAACTCTCACTCGCGAAATAAAAAACATGGGACGGGCGGAAGCTCTTCACACAGCAGCCGACCAACCAGCCGCTCCCCATCCTCATCTCGCCTACCCATCACGTCAAGCCTGGGGGCGGAGCTTACGCGCAGGAAGAAGGAGCGCCAGGCAGCTGCAGCCCGCAGCTCTTCAGCATCTCAGCAGACGAATACAGTGCCGCCTTCACAACCCCCAGAGCCACAGGCAGAGCCAGAGAAAACCCTGCCCCCTGAGCCCCAAAGACTGCCTATTAATGCCCAGAATACAGCTCCAGTGGAGGAAGCCcatgtagctccaccccctctcCCCATTCCATCGCCTCCTCCCCCTCTGCCTCTttattctcctcctcctctgcctCTAAATTCCCCTCCGCCTCTCCCTCTGAATTCTCCtccacctctccctctctcctctcctcctccttccttaCCTTTGGCGCCTCAGGTATCTTTTGCTTCTGATAAGTCTAAGAGCCCCGCCCACAAGAACATGCAGAGCTCAGCAGCCCAGCCAATCAAAACCTCTACACTGCCCCCTCTTCCCTTGCCACCTGTACTACTGGGAGACTGCAGGGACAGTCCGAAGAAGACCATTTCAAGTCACAGGTCCTCGaggaaagagcgagagagggagagagaaagggataaGGAGAAGGAAGTTAGGCCACGCCTTCTCAGTGACCTGCCTCTTCCCCCTTTACTTGCTGGGGGAGAcccctctcctcctccatctcctgTGCAGGAAGCCCCACCTCCTGTACAGTCTACCTATAAGAAGAGACCAAAgttCTGCTCCCCACGCTTTGGGGAAAGGAGGCAGACTCAGATTGACTGGGGAAAACGCTGTGTGGACAAGTTTGACATCATTGGCATCATAGGCGAGGGCACCTACGGCCAGGTGTATAAAGCAAAGGACAAGGACACAGGAGAGCTGGTGGCCTTGAAGAAGGTACGGCTGGATAACGAGAAGGAAGGTTTCCCTATCACAGCTATCAGAGAAATAAAGATCCTTAGGCAGCTGAACCATCGCAGCGTTGTCAATATGAAGGAGATTGTCACGGACAAGCAGGATGCGCTGGACTTCAAAAAGGACAAAGGTGCGTTTTACTTGGTGTTTGAGTACATGGACCACGACCTGATGGGCCTGTTGGAGTCTGGGCTGGTGTCATTCTCACAGGAGCATATCCGGAGCTTCATGCGGCAGCTGATGGAAGGCCTGGACTATTGCCATAAGAAAAACTTTCTGCATAGAGATATCAAATGTTCCAACATCCTGCTGAACAACAGTGGCCAGATAAAGCTAGCAGATTTTGGCTTGGCGCGTCTTTATAATTCAGAAGAAAGCCGGCCGTACACCAATAAGGTGATCACACTGTGGTACCGCCCACCAGAGCTTCTGCTGGGGGAAGAAAGATACTCACCGGCCATTGATGTTTGGAGCTGCGGATGTATTCTGGGTGAGCTGTTCACTAAGAAACCCATCTTTCAGGCCAATCAAGAGCTTCTTCAGCTAGAACTAATCAGccGTTTGTGTGGCAGCCCCTGTCCTGCAGTCTGGCCCGATGTGATTAAACTTCCCTACTTCAACACCATGAAACCCAAGAAACAGTACAGACGCAGATTAAGAGAAGAGTTCTCATTCCTGCCCACCCCAGCGCTTGACTTGCTAGACCGGATGCTGACCTTGGACCCCTCTCGGAGGTGTACGGCAGAGCAGGCTCTTGAGAGCCAGTTCCTGTGTGACGTAGATCCCAGCAAAATGTCACCTCCAGATTTGCCTCACTGGCAGGACTGTCACGAGTTGTGGAGTAAGAAGCGTCGACGGCAGAGGCAGAGCGGCGTGTCTGAGGATGTGCCTATTACCAAAGTGCCCCAGAAGGAACCCGGAGGAGCTCCCAGCAAAGAGAACTGCCATCCTCCCCCTAGCCCAACCCCACCACctgcttctgcccatccacccTCCATCTCCACTACAGATCTTGCAGGTCTCGGAGCCGAACAGTTAAATCAGACAGAGCTGGCGGTTCTGCTGAACCTCCTGCAGGGTCAGACGGACCGACTTTCTCTTCCTCAGATGGCCGAGCAGATCCTGAGCTCTTGCTCCGAAGGCTCCTCCTCTACTCTCCCTTCCACGGCCCCGGCTGCCTCCACGCCCGATCCAGAGTCGACGCAGCAGCTGGAGTTACTCAGCCAGACGCTGTCCTCTCTTGTGCAGAGCTCGTCTAACCCCCAGCCTGTGGAGGCCACCTCAGACGACCACACTGCTCTACTGTCACTTTTACTGAGCCAGATCATTAAAGCCCAGCCTCCAGATGCGGGACAGGCAGACGAAAGCAACGGCGTCCAATCAGACGAGGCGGTCACACAAAGCAACTCCGCCTCAATTTCCAGCAGCGATGTCAAGGGTACAGCTTTATCAAATGAAAAGTCGATCGCCCAGAACTCCGCGCTGACCCTCGACCTCCCGGCCCTGGCCGCCACCCCGTCACACTCCGAAGACATCGGCACGGATGTGGCAGCCGCACTTCTCCAGCTGATTTCCCAGCATGCCTCTGACAGTAAGGCCTCCTTGGCTGACCTGCCGCCTTCTTCCTCCACCTCTTCCTCCCCTCCGCCTCCTTCACTCGGCCAGCCGGAGCCTCAGGCTAACGCTCAGTACCCGCGGGACCAGGACCACCGCTTTAGCCGGGACTCCTGCAGGGAGAGCTCACATGACAGCCACTCAGCAGCCGAGTCATAAACAAGGACTGACCTCTAGCATCTgtgtcactgctggagcaaTCTGACGGACAATGGCGTGATTTTATCTGTCATAGCAAGACCTCACAActccatttattatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU266985 lncRNA upstream 148449 11050464 ~ 11051863 (+) True G196728
TU266984 lncRNA upstream 151482 11042954 ~ 11048830 (+) True G196727
TU266983 lncRNA upstream 156383 11042954 ~ 11043929 (+) False G196727
TU266976 lncRNA upstream 170028 11029130 ~ 11030284 (+) False samd14
TU266967 lncRNA upstream 243275 10956010 ~ 10957037 (+) True G196712
TU267030 lncRNA downstream 101304 11340907 ~ 11341624 (+) True G196759
TU267034 lncRNA downstream 116934 11356537 ~ 11359180 (+) True G196762
TU267235 lncRNA downstream 223124 11462727 ~ 11483867 (+) True G196914
TU267239 lncRNA downstream 247214 11486817 ~ 11487100 (+) True G196918
TU267247 lncRNA downstream 253974 11493577 ~ 11500681 (+) False G196923
XM_007230782.3 mRNA upstream 84940 11108041 ~ 11115372 (+) True LOC103039714
XM_015607951.2 mRNA upstream 84940 11108042 ~ 11115372 (+) False LOC103039714
XM_007230779.3 mRNA upstream 138266 11052718 ~ 11062046 (+) True ankle1
XM_022683041.1 mRNA upstream 169043 11011041 ~ 11031269 (+) False samd14
XM_007230789.3 mRNA downstream 5353 11244956 ~ 11284551 (+) True LOC103041779
XM_022683045.1 mRNA downstream 51573 11291176 ~ 11317552 (+) True stard3
XM_022683046.1 mRNA downstream 55291 11294894 ~ 11317552 (+) False stard3
XM_007230792.3 mRNA downstream 82299 11321902 ~ 11327936 (+) True LOC103042600
XM_007230793.3 mRNA downstream 89906 11329509 ~ 11334751 (+) True naxe
TU266794 other upstream 708211 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 972509 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 972818 10227422 ~ 10227494 (+) True trnap-agg_19
trnap-agg_18 other upstream 973136 10227106 ~ 10227176 (+) True trnap-agg_18
trnap-agg_17 other upstream 974612 10225630 ~ 10225700 (+) True trnap-agg_17
TU267213 other downstream 162591 11402194 ~ 11417588 (+) False mrpl24
TU267214 other downstream 162591 11402194 ~ 11417588 (+) False mrpl24
TU267531 other downstream 1475765 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 1649755 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 1717257 12956860 ~ 12964344 (+) False s100a14

Expression Profile