RNA id: XM_007230795.3


Basic Information

Item Value
RNA id XM_007230795.3
length 1411
RNA type mRNA
GC content 0.54
exon number 6
gene id sf3b4
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11343109 ~ 11346902 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACGTGTTAGCAGCGGAAGAGGATCACCCGCAAACTTCCGTTTTTCCGCCAGCGCGTCGTTCATCATGGCGGCGGGTCCGATATCAGAAAGAAACCAGGATGCTACGGTATATGTAGGCGGTCTGGATGAAAAGGTTTCGGAGCCGCTGTTGTGGGAACTCTTCCTGCAAGCTGGACCAGTGGTCAACACACACATGCCCAAAGACAGAGTCACAGGGCAACATCAGGGTTATGGCTTTGTGGAGTTCCTCAGTGAGGAAGATGCTGATTATGCCATAAAGATCATGAACATGATCAAGCTGTATGGTAAACCAATACGAGTCAACAAAGCTTCAGCACACAACAAGAACTTAGACGTGGGTGCCAACATCTTCATCGGGAACTTGGACCCCGAAATCGACGAGAAGCTGCTTTATGATACTTTCAGTGCTTTCGGCGTCATCCTTCAGACACCCAAGATTATGCGTGACCCGGACACAGGCAACTCCAAGGGTTACGCTTTTATCAACTTTGCCAGTTTTGATGCCTCTGATGCTGCAATTGAAGCCATGAATGGCCAGTACCTCTGTAATCGACCAATCACAGTCTCTTACGCCTTTAAGAAGGATTCCAAAGGTGAGAGGCACGGCTCAGCAGCCGAGCGTCTCCTGGCTGCACAGAACCCTCTCTCGCAGGCTGATAGGCCACATCAGCTGTTTGCAGatgccccgccccctcccaCTGCACCTACGCCTGTAATGACCACACTGGGAGCAGCCATTCCCATTCCAGGCATGCCTCCTCCTGGCGCATTCCCCCCTGTGCCACCCCCAGGCTCAATGCCACCTGGAATGCCCCCTGGCATGCCCATGCCCCTTGCTCCAGGGACACCTTCCCCTCAGGGCGGTGCTACAGGACCTCCCCCAGGACCACCGCCCTTCCCACCTGCTGGAATGCACCCTCCAGGTATGCCACCTATGCCAATGCCCCCTACTGGACCACCAGGTATGGTGCCACCACCCCCTGGCCCCCCTGGTACCACTCGGGCACCGCCTCCACCAGGCATGCCTCCTCCTCCACAGATGGGCATGCCCCCCAGAGGACCATTTGGACCACCCATGGGTCCCCCTATGCATCCAGGCATGAGGGGTCCCCCTCCCCCAATGCCACCTCCGGGCTATGCCGGAGGACCACCCAGACCGCCTCCGTTTGGTTTCCAGAGAGCACCTCCCATGCCCCCAAGACCCCCAGCACCACCCAGAGGACCCATACGTGCACCTATGCCTCCTTAAAAAGAGtgttaactttttattatttgaattgTCACGTTTTTATATTCATTAGTTCATGGACGACAAGAAATTTAATTTCCTTTCATTTTTGCTCACTGTACTTTCTTTAGAAtggaataaacatttttttatagaaatga

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12831 SF3B4, SAP49; splicing factor 3B subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU267030 lncRNA upstream 1485 11340907 ~ 11341624 (+) True G196759
TU266985 lncRNA upstream 291246 11050464 ~ 11051863 (+) True G196728
TU266984 lncRNA upstream 294279 11042954 ~ 11048830 (+) True G196727
TU266983 lncRNA upstream 299180 11042954 ~ 11043929 (+) False G196727
TU266976 lncRNA upstream 312825 11029130 ~ 11030284 (+) False samd14
TU267034 lncRNA downstream 9635 11356537 ~ 11359180 (+) True G196762
TU267235 lncRNA downstream 115825 11462727 ~ 11483867 (+) True G196914
TU267239 lncRNA downstream 139915 11486817 ~ 11487100 (+) True G196918
TU267247 lncRNA downstream 146675 11493577 ~ 11500681 (+) False G196923
TU267252 lncRNA downstream 146675 11493577 ~ 11499786 (+) False G196923
XM_007230793.3 mRNA upstream 8358 11329509 ~ 11334751 (+) True naxe
XM_007230792.3 mRNA upstream 15173 11321902 ~ 11327936 (+) True LOC103042600
XM_022683045.1 mRNA upstream 25557 11291176 ~ 11317552 (+) True stard3
XM_022683046.1 mRNA upstream 25557 11294894 ~ 11317552 (+) False stard3
XM_007230789.3 mRNA upstream 58558 11244956 ~ 11284551 (+) True LOC103041779
XM_007230799.3 mRNA downstream 14085 11360987 ~ 11376005 (+) True mindy1
XM_007230806.3 mRNA downstream 55253 11402155 ~ 11417703 (+) False mrpl24
XM_007230805.3 mRNA downstream 55283 11402185 ~ 11417703 (+) True mrpl24
XM_007230807.3 mRNA downstream 72827 11419729 ~ 11426659 (+) True prcc
XM_007230810.3 mRNA downstream 87277 11434179 ~ 11447477 (+) True lix1l
TU266794 other upstream 851008 10491546 ~ 10492101 (+) True G196633
trnap-agg_20 other upstream 1115306 10227734 ~ 10227803 (+) True trnap-agg_20
trnap-agg_19 other upstream 1115615 10227422 ~ 10227494 (+) True trnap-agg_19
trnap-agg_18 other upstream 1115933 10227106 ~ 10227176 (+) True trnap-agg_18
trnap-agg_17 other upstream 1117409 10225630 ~ 10225700 (+) True trnap-agg_17
TU267213 other downstream 55292 11402194 ~ 11417588 (+) False mrpl24
TU267214 other downstream 55292 11402194 ~ 11417588 (+) False mrpl24
TU267531 other downstream 1368466 12715368 ~ 12774496 (+) True G197106
TU267630 other downstream 1542456 12889358 ~ 12928524 (+) True LOC103029421
TU267673 other downstream 1609958 12956860 ~ 12964344 (+) False s100a14

Expression Profile