RNA id: XM_007245670.3


Basic Information

Item Value
RNA id XM_007245670.3
length 2196
RNA type mRNA
GC content 0.51
exon number 8
gene id nkain1
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29021175 ~ 29034378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagaaagaggaggaggagtggggGGCGCGCGAGGCTCCAGCTGCACAGGAATCGGCCTCTCAGATCGCCGGAGGAGAGCGACACCGGACAGACAGCACGCGCGGCGGACTCGGCGTGGCACAGGCGGGCGGCGCTGCGGTTCGGTTCGGCTCGGGCGGTATTATGGTCAGCGGCTCTGCGGAGAGACGCCAGCGCACGGAACGCGTGGGTGCGGCCCGCCCGGCCCGCGCTCCCTGACGTGCTGACcgaccgctctctctctcctgcgcGCGCGCGCTCACCCACCCTCCACGCTGGAGCTCACGGGAGATCCCGCGTTTCCGCGACGCCTCGCGGGGCCCAAGCCGTGCCTCAAGCGCGAGAGCATGGGCCGGTGCGACGGGAGGTGCACGCTGGTGGTCATCTGCTCTCTGCAGCTGCTGGCTGCGCTGCAGAGGCAGGTGTTTGATTTTCTGGGCTATCAGTGGGCTCCTATCTTAGCCAACTTCCTCCACATCATGGCTGTTATTTTGGGAGTGTTCGGGACGGTGCAGGTCCGCTCTCGATATCTTATCTTGTATGCCGTATGGCTGGTGGTCTGGGTTGGCTGGAACTCTTTCATCATCTGTTTCTACCTGGAGGTGGGCCACCTGTCTCAAAACAGAGATTTCCTGATGACATTCAACACCTCATTACATCGCTCCTGGTGGATGGAGAACGGGCCCGGCTGCTTAGTTACAACAGTGCCTGACTCGCCTTTGGCTCCACAAGACCACCATGTGATCACAGTCAGTGGCTGCCTACTGGACTACCAGTACATAGAGGTGGTCAGCTCTGCTCTGCAAGTGTTCCTCGCACTTTTTGGCTTTGTATATGCCTGCTATGTTAGCAAAGTCTTCCTGGATGATGAGGACAGCTTTGATTTTATCGGTGGATTTGACTCATATGGTTACCAGCCTCCACAAAAGAGTTCCCACCTACAGCTGCAGCCTCTCTACACggctGGGTAAGAGGACCCATCCGCTCCCAACTGCGCTGGAGtggaacagcagcagatgagcTCCTGAGAAAGGCCGTCCTGTGCATTGTGGGATATTTAGTGCTCCAAAATTCagtctctgtgtttctgaaaCTGTCTCCCTCTGCTGGCAGAAAACATGAATTGCGAGCACAGACACTGTGTGTTCAGTGAATGACTCTGAAGGAGAGGGGCTGTGGGCTAAAGCTTGTACTGCCACACTGTTTAGTGCATGTTTCCATATACACAGGAAGTAAAAGTGCACAAAGTTTTACCCAGATTAGACCACTTACTACCGAGCCGGGATCTCTACCACAGAGTACCAGTCCAGTTGCTTTGTTACTTTTTGGAAAGTAATGTTACGTTTTAAAGCCATAGTGCATTGCAGCAGCTGATCACTCTGACTCTGGTGTGCTTCCACAATAATGTGTAACGATAAGTCCGGATatgctgatgtttttttgtgtgttgcaCAGTTTTTAATAGACGCTCACTGACACACACCGGTGTGTGTCCTCAGTGGGTGGACAGTATGTGCTTTTGCCCATGGCCTGTGAGAGAGGGGAAGAACTTAAGCAGAACAGTAACAGACAACGCCACAACAGTCCTCGTCGTGTTGCCTACTTTTCTAGGCATTTGGGGGAAGATTTGAGGACCACAACAGATTCTATTGCCatgtgtgcgtctgtgtgtaTACATGTGTGTATTTCTAGTGTATTCACGAGGAGGATAGCCTTTGACCCAGGTAACCTTTGAACTCTAGTCTGAGCTGTTCATCATTTCAGCTCTGCAGtaagagtgtgtgcgtgtgtgtgtgtgtgagggagaaggctgtttttttctttgtactcTGACTTAAGCCAATACAGTGTAATGTGTTAGATGAATGTTTTAGGTGGGCTAGTTGTTTAGTCAGGGAAAAGTAGGATTTTCTGCATGTAAATATCAGACTGATTGTAGAGTGGATGCACATCAGGGTGGCCCTCActtgtgggagtgtgtgtgtggggggagtGGACTAAAAGTATGTGCTTGTGCACATAATGAATGTGAGTAGCCATAAATGTTTATTAGTAAACATCCATATGAAGAATGTATGTTAATGTATAtggctagtgtgtgtgtgtgtgtgtgtgtgtgtgaggggcaTGTCTGCGTGGTGTGTTGGTTGTTGGAACTAATAAACTCTTTCTAGATTA

Function

GO: NA

KEGG:

id description
K22735 NKAIN; sodium/potassium-transporting ATPase subunit beta-1-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272429 lncRNA upstream 2078 29018573 ~ 29019097 (+) True G200628
TU272200 lncRNA upstream 239141 28770134 ~ 28782034 (+) True G200511
TU272159 lncRNA upstream 275851 28703778 ~ 28745324 (+) False G200482
TU272169 lncRNA upstream 282849 28736851 ~ 28738326 (+) True G200490
TU272165 lncRNA upstream 292219 28726065 ~ 28728956 (+) True G200488
TU272650 lncRNA downstream 427783 29462161 ~ 29467157 (+) True G200780
TU272652 lncRNA downstream 427783 29462161 ~ 29467527 (+) False G200780
TU272661 lncRNA downstream 450562 29484940 ~ 29485686 (+) True G200785
TU272676 lncRNA downstream 493685 29528063 ~ 29568073 (+) False lypla2
TU272694 lncRNA downstream 514936 29549314 ~ 29552883 (+) False eloa
XM_007245669.2 mRNA upstream 6172 29006555 ~ 29015003 (+) True snrnp40
XM_007245666.3 mRNA upstream 22690 28994884 ~ 28998485 (+) True LOC103031913
XM_022683285.1 mRNA upstream 68661 28932316 ~ 28952514 (+) False arpp21
XM_022683284.1 mRNA upstream 68661 28932324 ~ 28952514 (+) False arpp21
XM_022683283.1 mRNA upstream 68661 28932325 ~ 28952514 (+) True arpp21
XM_007245672.3 mRNA downstream 4993 29039371 ~ 29064155 (+) False pum1
XM_007245671.3 mRNA downstream 4994 29039372 ~ 29064155 (+) True pum1
XM_007245673.3 mRNA downstream 4994 29039372 ~ 29064155 (+) False pum1
XM_007245674.3 mRNA downstream 4994 29039372 ~ 29064155 (+) False pum1
XM_007245675.3 mRNA downstream 4994 29039372 ~ 29064155 (+) False pum1
TU271959 other upstream 824977 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 1037825 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1202525 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1530145 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1531039 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 516758 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 1975548 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 1978333 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 2396169 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 2396573 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile