RNA id: XM_022683294.1


Basic Information

Item Value
RNA id XM_022683294.1
length 1560
RNA type mRNA
GC content 0.36
exon number 9
gene id syce1
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29397398 ~ 29402283 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATAACCACAGtcgttttatttaaattaaaaaatcccAGAAAATAACGCATTTTCACCCCAAAATAAAAAGAACTTATCCAGGAAATAGAGAAAGTCTCGGGTCTGCTCGCCCTCATTTAAAAAAGACTGCATCGCGTGAGCAGTGTTGACCGTTACCGCACATCCGGGTTCATTCCCAAACgaattagctagttaattagcCAGTTAGCTTTACCCAAACAGAACTTCACTTATACCCCAATTATTCAGTTGTATATAGATACACAACAAAGATGACTATAAAACTGGTCAGTGACAATGAACCAAAAATAGAGGAGTTGCTGAAGAAACTTAAAAAGCTACAACAAGCCAAACTAGATCTTGAAGAGGATGTAAAGGAGGCCTATTCCCTTAAAAATACTTTGCATGATGAAGAAGATGCATTAAGcattgaggtcttaaagcttCAGGAAATgttgaatgaaaaaaatgAGACATGCAGATCTCTGCAGCTAAAATGTGAAGACCTTGAACAAGAGTCACAAAGGCAGTTTGAACTGAAGCAACAAAAAGAGGAGCTTGCAGGGCAGTACGGCTGTCAGATCCAGGAAACCAAGCTGAGACACAGGAAAATTCGGATGAAGTTTGAGAATCACCTGCAGCAACTAATGGGACAGCACAAGAACCTATACACTGTATTTACTCCAGAGAGACTTTCTACTGAGATACAATCTGCTGAATATGCTACACAGCAGTTGTTGAAAGCTGAGCAGCAGATGTTGGAGCAGGTAGCACACCTGCAGGAGCAGCTGAATAAAGCACAGGCCACAGATTCTGTGAAACGGATGCATGATGAATTATTTACAAAGATCCTGCATAGTTAAGAGAGTTTAAAGTCACACCAGGCATTCATCCTCACAAAAAGACTTCTGTACATTCTCAATGAGGTATTTgtaatattacagaaaaaatTGTTGGTGTTCTCTGTTCAGCCATGGATTTGCTTTGTTTTAACCTTATTTTTACTGTAAGAGTAACAGTATTGTTAATGTTATTATCATTAATTGCAGTTGATCACAAGTAAATCAGAAGTAAAAAGAACAAGGCCAACTACTcagaattgtttttatttgttaatataatacaaaatttACTAAAAGTTTGACTGAATTTCTCAAAAATTCAAAAAGATGACAAAGTTCTGTTATGTCAGTAATCAACATTATCAGCAATAAAATTTGATCATACTTCTGTATCAAACATCTAGTATATTACAGCATGCACCTCGTTTGATGCTCTGGGAGTTCTTTGGTCTTTAGTAATACCAGTCTGTCTGGTACCATAATTACAACTTTGCACTGAAAAAGTAGAGCCTAAGCCTGGTCCTGAGAGTATGTACCAACCATCTATTCAAAACTATCTCTGTGTAATGACATGGTTAACTCTGAAATGTCAACTTCAAGTCATACATGCATGGATTTTGCATAAGTATGTCCTACATAAGGACAGTAAAGTCAAAAAAGTGCTacaaatatgaataataaatgcATATACTAAAAACAAGTGTGCCaaaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272429 lncRNA upstream 378301 29018573 ~ 29019097 (+) True G200628
TU272200 lncRNA upstream 615364 28770134 ~ 28782034 (+) True G200511
TU272159 lncRNA upstream 652074 28703778 ~ 28745324 (+) False G200482
TU272650 lncRNA downstream 59878 29462161 ~ 29467157 (+) True G200780
TU272652 lncRNA downstream 59878 29462161 ~ 29467527 (+) False G200780
TU272661 lncRNA downstream 82657 29484940 ~ 29485686 (+) True G200785
TU272676 lncRNA downstream 125780 29528063 ~ 29568073 (+) False lypla2
TU272694 lncRNA downstream 147031 29549314 ~ 29552883 (+) False eloa
XM_022683293.1 mRNA upstream 4945 29376517 ~ 29392453 (+) True LOC103039490
XM_007245693.3 mRNA upstream 5179 29372764 ~ 29392219 (+) False LOC103039490
XM_015604907.2 mRNA upstream 27116 29309371 ~ 29370282 (+) True LOC103038962
XM_022683292.1 mRNA upstream 27742 29309371 ~ 29369656 (+) False LOC103038962
XM_007245692.3 mRNA upstream 27742 29309371 ~ 29369656 (+) False LOC103038962
XM_007245699.3 mRNA downstream 21134 29423417 ~ 29447209 (+) True kiaa0319l
XM_007245698.3 mRNA downstream 47333 29449616 ~ 29460631 (+) True cap1
XM_007245706.3 mRNA downstream 66466 29468749 ~ 29478259 (+) False LOC103042153
XM_007245703.3 mRNA downstream 66479 29468762 ~ 29478259 (+) False LOC103042153
XM_007245705.3 mRNA downstream 66479 29468762 ~ 29478259 (+) False LOC103042153
TU271959 other upstream 1201200 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 1414048 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1578748 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 1906368 27490937 ~ 27491030 (+) True trnai-uau_9
trnai-uau_8 other upstream 1907262 27490043 ~ 27490136 (+) True trnai-uau_8
TU272690 other downstream 148853 29551136 ~ 29552883 (+) False eloa
TU273012 other downstream 1607643 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 1610428 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 2028264 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 2028668 31430951 ~ 31431023 (+) True trnar-acg_20

Expression Profile