RNA id: XM_007245726.3


Basic Information

Item Value
RNA id XM_007245726.3
length 2112
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC103021940
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 29607069 ~ 29625468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTCGGAGACTCGACTCGCGTTTCTTCCTCAAAGATAAAGCGAATCCAGACATTCCCACAGAGGATTCCTCCAAACTTCACCCAGACTGCAGTTTAACTGACCCTATGGATACACGCACCGGGAATATGGCCTGTTCAGCCTCTCTCTGCCAATCAAGGCAAAAAGGAGCTCTCAGTTTTCCATAAGAGGATAATTAAAGCGGGATAATTGGAATTTCAGAACACAGGCAGCATGGGAACTTTACAGTCGagacatgCGTGTAAACGAAGAGAGAGTCCAGAGGgTGGCACCTTTGCAACAAGCCCTCTTACCTTCCACAGGGAGTCAGACACCGCCAGAGACAAGCAGAATGTGTGTGGTGCTGAGTTAAAGGATGAGAAATTCCTGGACCCTGACTGCCCTCTGGAGGTAATCCTGCCACCAGAGAGACCAGCTGAACACCAAAGTCACAAACTCACATCAGAGAGCGGAGATGCCCACCGGaggactgcaaaaaaaaatGAGCTGGAATGCAACATGCCTGCGACAGAGGAAAATCGCCAAGAGTGGGTTTTTACATTATACGACTTCGACAACAGCGGCAGAGTGACCAAGGAGGATATGTCCAGTCTGATGCATACCATCTATGAGGTGGTGGAGGCTTCAGTCAAACAGTCTGCATTGAGCAACAGCAAAACACTGCGGGTCAAACTGACAGTCACACCTTCATCTAGTGGCAGCAGAAAAGATCGAGATGTTGGGCTTTCTCTGAACAAGCGGGAGCAGCTGGAGGagacccatccctcacacatcAGGATACAGAGTCCAGATCCTGCGGTCAGTTCAGAGAAGAAGCTTTACCCTGTGGATGAGAACACTGAGCGCAGAAACCACTATTTAGACCTGGCTGGGATTGAAAACTACACGTCCAGATTTGAAGCAGATAACACTGTTCAGTCTCCAGCGGAGGAGCAGAATCAGGATGGCCTGACCCATGTGGCTCGTTCTACTTACCATCGGCGTCCACAACCCGACATCAGCAGCCCAGGGAAGTCCAGCGGTCGTGGAATCTCCTTTCTCAAGTCCCTGCGGAGCCGCAGTAAGTCCATGGGGGCAAGTGGAGGCACTGGCAAACCAAGCAGGCTCCATGGGTATCATCCCGTCAGCTGGTGCAGCCCCCCTCagccccagcagcagcagcctccgcCTCAGCACCAGTACAGCCACAGTAAGCGAGCCCGTTCCAGGCCAAGAGAAGCTCTTTCACCATCTATAGCCCACCCCAACCCGGACTGGGACTTGCAGCCTGGAACAGGAGCTTCTCCTGCAGGGTTTGTGCCTGTAGCTCAGAGGCACGAGCACCACCACCTCCAtgaacaccaccaccatcatcaccaccaccactactactCCTCCTGACTGCATTCTCTTCTAGAAAGAGAAATATGAAAATAGGAGCATTTTTAAGGGCTGATCTGCACAGACATTTGAGACACTTTCTACAAAACGCCTCACAAGATCAGCCTCtcctaaaaaaacagacaaaagacAGTATTCTCCCCATGTGAAGGAATGATAAAGTTTGTGAACTTTCTTAATCTATGCAACCATTGGTGCTAACAGAAAACAACTCTATTTTActttcttctctgtgttcagataaTCAATAGATGCTGACAAATCCCTTAAAAAGGAGATATAGTGCCCCCATGTGATTGTAAATTGAGTTGTCCAAAATGTAATATAGAGAATGTGAGGTTTTATATCATTGGTCACCATTCCTACTCTTGGAGATCTACTCTTCTGCAGAATTCAGCTTCAAAATAAAACTGTCTCTACGTAATCCAGCTAATCAATGTCTTTATAAGTGCCTAATTGAATGAGAGGGTTAGGGCAGGCTAGGTTAGGAGGTGAAAGTTGCAGGAAGGTAGATCTTCAGGAGGATTGATGACCATGAAAACTATTCAGTATGATACCACTGACGTTTAAGTCAACGATGCCCTACAGACTGATCATGTTTTCCTCAGGATTTCTATACAAATAACCACtcattttatacaatatatattatgtcTCATGTATGTTAAAAATGCACTTGTGCATTAAAAGGAGTATATCACATTATTTATAA

Function

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU272702 lncRNA upstream 13532 29593020 ~ 29593537 (+) True G200799
TU272676 lncRNA upstream 38996 29528063 ~ 29568073 (+) False lypla2
TU272708 lncRNA downstream 10653 29636121 ~ 29640007 (+) False G200803
TU272707 lncRNA downstream 11546 29637014 ~ 29640007 (+) True G200803
XR_002651721.1 lncRNA downstream 49318 29674786 ~ 29744233 (+) False LOC111195537
XR_002651722.1 lncRNA downstream 49318 29674786 ~ 29708076 (+) False LOC111195537
XR_002651720.1 lncRNA downstream 49318 29674786 ~ 29702995 (+) False LOC111195537
XM_007245723.3 mRNA upstream 2316 29601867 ~ 29604753 (+) True gatad1
XM_007245721.3 mRNA upstream 6905 29570078 ~ 29600164 (+) True LOC103046858
XM_007245722.3 mRNA upstream 6905 29570078 ~ 29600164 (+) False LOC103046858
XM_015604908.2 mRNA upstream 38994 29558549 ~ 29568075 (+) False lypla2
XM_007245718.3 mRNA upstream 38994 29558712 ~ 29568075 (+) True lypla2
XM_007245725.3 mRNA downstream 819 29626287 ~ 29636049 (+) True LOC103021391
XM_007245728.3 mRNA downstream 21300 29646768 ~ 29652821 (+) True LOC103022546
XM_022683302.1 mRNA downstream 21300 29646768 ~ 29652821 (+) False LOC103022546
XM_022683304.1 mRNA downstream 21300 29646768 ~ 29652821 (+) False LOC103022546
XM_022683303.1 mRNA downstream 21300 29646768 ~ 29652821 (+) False LOC103022546
TU272690 other upstream 54186 29551136 ~ 29552883 (+) False eloa
TU271959 other upstream 1410871 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 1623719 27981513 ~ 27983350 (+) False LOC103032101
TU271825 other upstream 1788419 27815336 ~ 27818650 (+) True G200235
trnai-uau_9 other upstream 2116039 27490937 ~ 27491030 (+) True trnai-uau_9
TU273012 other downstream 1384458 31009926 ~ 31012165 (+) False rbm24
TU273004 other downstream 1387243 31012711 ~ 31015045 (+) True G201018
trnaq-uug_6 other downstream 1805079 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 1805483 31430951 ~ 31431023 (+) True trnar-acg_20
trnaq-cug_18 other downstream 1805773 31431241 ~ 31431312 (+) True trnaq-cug_18

Expression Profile