RNA id: XM_022683326.1


Basic Information

Item Value
RNA id XM_022683326.1
length 1955
RNA type mRNA
GC content 0.47
exon number 13
gene id cap2
representative False

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 31097899 ~ 31133970 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTTTGTGTGTTGTCAGAGGCTTGACCATTATGGAAGCGCTAGTTGAGCGACTGGAACAGGCCGTGATTCGGCTGGAGGCCGTTTCATCCAAACTCCAGGGTTGCTCTGGAGGCTTGATCAATGGTGTCATTAATGGAATCAATGGTGAAAGCCAGTGCATGGATGCATTTGACCGTTTACTGAAAGGTTCCCTATCTGAATACTTGAAGAACAGCCGGACTATTGGAGGCGATGTGGCTCAGCATGCGGAGATGGTACAAAATGCCCTGCAGGTGCAGCGGACATTCATCAAAATGGCCTCCACACACCAGGAACCTGCACAGGCAGAGCTGGCAGATCTCCTCAGGCCCATCTCAGAAAAGATTGAGGAGATCCAGAACTTCCGAGAGAAGAACCGAGGCAGCCAGCTGTTTAACCATCTGTCCGCCGTCAGTGAGAGCATTCCCGCACTGGGATGGGTTGCAGTGAGTCAGAAGCCGGGGCCCTATGTAAAGGAGATGAATGATGCTGCTATGTTCTACACCAACAGAGTCCTGAAAGACTACAAAGACACTGACCCCTGCCATGTCGAGTGGGTGCGCTCATACCTGAATATCTGGACTGAACTGCAGACCTACATCAAACAGCACCACACCACTGGACTGGTCTGGAGCAAGACTGGTCCTGTAGCTCCTCCATCTCTGTTTGTGGCTAAGCCTGCTGGTCCctgccctcctcctcctccaccaccacctccacccatATTCACAGACGAGGAGCCTAAACCTGACAACAGTGCGGCCCAGCGTTCAGCTCTGTTTGCCCAGCTCAACCAGGGGGAGGCCATCACTAACAggCTGAAGCATGTGTCCGATCAGCAGAAGACCCATAAGAACCCAAACCTACGTTCTCAGGGTGAAGCACAGAAGACCTCTCCAACAAAAGGCAAAGCATCCAGCTCATCTGCTCCCACACCAGCCAAGAAACACTCACCTGTACTGGAACTGGAGGGGAAGAAGTGGAGGGTGGAGTATCAGGAGCAGACCCATGATCTGGTGATAGAGGAGACTGAGCTAAAACAGGTGGTTTATATCTTTAGCTGCAACAACTCCACAATTCAGATCAAAGGCAAAGTCAACTCAATCATTGTGGACAACTGCAAGAAGCTTGGACTTGTGTTTGAAAATGTGGTTGGAATACTTGAAGTTATCAACTCCAGGGACATTCAGCTCCAGGTCCTGGGGAAAGTGCCTACCATGTCCATCAATAAGACCGAGGGATGCCACGTCTACTTGAGTAAGGAGTCTCTCGACTGTGAGATTGTCAGTGCCAAGAGTTCTGAAATGAACATCCTGGTTCCTCAGGAAGATGATGACTATAGAGAGTTCCCAGTGCCAGAGCAGTTCAAGACAGTTTGGGATGGGTCCAAGCTGGTGACAGAGCCAACGGAGCTTGCTGGTTGACCGACAGCTTCGTTATGCTTCCCAGAACATCTCTACTGGTAGCCCCCAATCAGTCAGTGCTGGTCTCGCAGACACAAATTAGGCTTAGTCCCAGTCCTAAATGATGCTGGCAGTGAGAGTTCTCCACTGAAAATCCCTTTTGTAGTGTAAGACAATCTGTGCTATATGATTAAGACCCAGACTAATCACATCTATTAGCACAATTCCATAGTTTAGAGGATTGGATGCAGGTATTAGAGATTGTTTTACTGAGATCATTTTTCCTTTACAGCTAACTGATCAGATTTTACACTCTAGATTATATTAAATTTGAATTTCTGCTGATCtggagtcagcaaaaaacagCAGTTAAGGTATATCATCTTTGTAAAGTGGTCCCTGATAATACTAAAGCaattctatttgttttattagtgtAATTTTGAGCATCATGTTTCAGACCTTTGCATTTTGTGTTTGGCAGTTATCTGCCTTTGTGTtgacaaaagtaaaatattttcctCAATCCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU273011 lncRNA upstream 13719 31009926 ~ 31084604 (+) False rbm24
TU273008 lncRNA upstream 68434 31018604 ~ 31029889 (+) True G201019
TU273026 lncRNA upstream 92398 31005632 ~ 31005925 (+) True G201030
TU272988 lncRNA upstream 288097 30809995 ~ 30810226 (+) True G201010
TU272986 lncRNA upstream 350121 30748003 ~ 30748202 (+) True G201008
TU273150 lncRNA downstream 125975 31259945 ~ 31262960 (+) True G201135
TU273187 lncRNA downstream 307475 31441445 ~ 31445123 (+) False G201163
TU273188 lncRNA downstream 307475 31441445 ~ 31451756 (+) True G201163
TU273192 lncRNA downstream 414379 31548349 ~ 31631753 (+) True G201167
TU273237 lncRNA downstream 805531 31939501 ~ 31939940 (+) True G201206
XM_015604909.2 mRNA upstream 13690 31069506 ~ 31084633 (+) True rbm24
XM_007245743.3 mRNA upstream 35841 31056020 ~ 31062482 (+) True stmnd1
XM_015604911.2 mRNA upstream 112479 30978750 ~ 30985844 (+) True aard
XM_007245735.3 mRNA upstream 123812 30971403 ~ 30974511 (+) True utp23
XM_022682872.1 mRNA upstream 848468 30248587 ~ 30249855 (+) True LOC111195487
XM_007245747.3 mRNA downstream 7868 31141838 ~ 31149221 (+) True vps28
XM_007245746.3 mRNA downstream 16890 31150860 ~ 31162358 (+) True mapk15
XM_022683327.1 mRNA downstream 16890 31150860 ~ 31162358 (+) False mapk15
XM_007245745.2 mRNA downstream 30256 31164226 ~ 31187101 (+) True grina
XM_007245744.2 mRNA downstream 30256 31164226 ~ 31187101 (+) False grina
TU273004 other upstream 83278 31012711 ~ 31015045 (+) True G201018
TU273012 other upstream 86158 31009926 ~ 31012165 (+) False rbm24
TU272690 other upstream 1545440 29551136 ~ 29552883 (+) False eloa
TU271959 other upstream 2902125 28193574 ~ 28196198 (+) True G200341
TU271914 other upstream 3114973 27981513 ~ 27983350 (+) False LOC103032101
trnaq-uug_6 other downstream 296577 31430547 ~ 31430618 (+) True trnaq-uug_6
trnar-acg_20 other downstream 296981 31430951 ~ 31431023 (+) True trnar-acg_20
trnaq-cug_18 other downstream 297271 31431241 ~ 31431312 (+) True trnaq-cug_18
trnaq-cug_19 other downstream 297601 31431571 ~ 31431642 (+) True trnaq-cug_19
trnaq-cug_20 other downstream 297934 31431904 ~ 31431975 (+) True trnaq-cug_20

Expression Profile