RNA id: XM_007247812.3


Basic Information

Item Value
RNA id XM_007247812.3
length 1552
RNA type mRNA
GC content 0.51
exon number 10
gene id arpc1b
representative True

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 34256564 ~ 34271331 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTAAGGAAATAGTTGAGTTCATTGAGAGCCGAGCCAGCGTTTGTGTTGACTGCTCAGAGTCCACGAACTCAGGCTGCTTCTGTTCCACCTCTTCCTATCTGCTAGATCTCAGGGAAACTTCCCGTTTAACCATTTCCAGGAGACCTGAACCATGGCTTACCACAGCTTTCTACTGGAACCCATCAGCTGCCACGCCTGGAACAAGGACCGAACCCAAATTGCACTGTGTCCCAATAACCATGACGTCCATATCTACAAAAAGGCTGGGAATAGCTGGACTAAAACTCATGAGCTAAAGGAGCACAATGGGCAGGTGACTGGTATCGACTGGGCCCCGGAGAGCAACCGCATCGTCACCTGTGGCACTGACCGCAACGCCTACGTGTGGACCCTGAAGGGGGACGTGTGGAAGCCCACTCTGGTTATTCTCAGGATTAACCGTGCTGCCCGCTGTGTGAAGTGGTCGCCCAAAGAGAACAAGTTTGCCGTTGGCAGCGGCTCCCGCCTCATCTCCGTCTGCTACTTCGAGCAGGAGAATGACTGGTGGGTGTGTAAGCACATCAAGAAGCCTATCCGCTCCACCATCCTCTGCCTGGACTGGCACCCCAACAACATCCTGCTGGCTGCTGGATCCTGTGACTTCAAATGCAGGATTTTCTCGGCCTATATTAAAGAGGTGGAGGAGAAGCCCGCTCCGACCCCGTGGGGCTCTAAGATGCCATTCGGGGAGGTGATGTTTGAGTCCACTGGAACTGCAGGCTGGGTACACGGGGTCTGCTTCTCTGACAGTGGAAACCGTGTGGCCTGGGCCAGCCATGACAGCACTGTAGCTGTGGCTGAGGGAGGCAAGAGTGCTGTAGTCACTAGTCTGACCTCAGAGACTCTTCCTCTGCTTTGTGTGACGTTCATCACTGAGAACAGCTTAGTGGCTGCAGGCCATGACTGCTACCCTGCGCTGTTTGTCTACGATGCTGGTAAAGGGGCTATTACTTTTGGAGGGAAGCTGGATGTCCCCAAGCAGAGCGCTCAGAAGGGCATGACGGCCAGAGAGCGCTTCCAGAACCTGGACAAGAAagccacttctgacaccaaagaGGCGGTGCTGGAGTCCCTGCACAAAAACAGCATCAGCCAAATCTCACTCCTGGATGGTGGGAAAGCTAAGTGTACCAAATTCTGCACCACTGGAATGGATGGAGGCATGGCCATTTGGGACGTAAAGTCCATCGAATCTGCCATGAAAGACCTGAAGATCGTCTAAGCTGAGAGAACTTCAGGCTGTTCTACAGGAAAAAGGGTTGATTGAGATATCAACACCCTGCTGCTTATATGCAAATATGCCGCAATACATTTCAGATCATTGAAAATCATTGAAAattgttcctcagtgtagtttAAACAGCAGTTATGCTAATCAGTGGGAGATAATGGGATGAACTAAGCACTTGTTATTTGATgctgtattacattttcagatatGCTGGTCATAGCGTGCTTGTATTACTGTTTTTGCTctgatttttaataaacagtgtctTATGAGCGCCTGAA

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
K05757 ARPC1A_B; actin related protein 2/3 complex, subunit 1A/1B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU274021 lncRNA upstream 62323 34161445 ~ 34194241 (+) True G201805
TU274013 lncRNA upstream 177813 34078541 ~ 34078751 (+) True G201800
TU273994 lncRNA upstream 231111 34024322 ~ 34025453 (+) True G201786
TU273918 lncRNA upstream 349086 33816101 ~ 33907478 (+) True G201722
TU274059 lncRNA downstream 36644 34307975 ~ 34309433 (+) True G201830
TU274085 lncRNA downstream 130266 34401597 ~ 34401908 (+) True G201851
TU274049 lncRNA downstream 134290 34405621 ~ 34408905 (+) False G201824
TU274052 lncRNA downstream 136635 34407966 ~ 34422325 (+) True G201824
TU274093 lncRNA downstream 162710 34434041 ~ 34436093 (+) True G201859
XM_007247811.3 mRNA upstream 448 34246152 ~ 34256116 (+) True arpc1a
XM_022683374.1 mRNA upstream 12545 34206852 ~ 34244019 (+) True LOC103025280
XM_022682876.1 mRNA upstream 180051 34034500 ~ 34076513 (+) True micall2
XM_022683373.1 mRNA upstream 232362 34015702 ~ 34024202 (+) True LOC103027444
XM_022682875.1 mRNA upstream 257823 33939434 ~ 33998741 (+) True ints1
XM_007247814.3 mRNA downstream 14756 34286087 ~ 34321859 (+) True mmd2
XM_022682877.1 mRNA downstream 834707 35106038 ~ 35124618 (+) True LOC111195488
XM_022683380.1 mRNA downstream 872944 35144275 ~ 35237634 (+) True card11
XM_022683381.1 mRNA downstream 872944 35144275 ~ 35237634 (+) False card11
XM_007247801.3 mRNA downstream 991739 35263070 ~ 35336079 (+) True gna12
TU273913 other upstream 441580 33811461 ~ 33814984 (+) False psmg3
TU273611 other upstream 981657 33260173 ~ 33274907 (+) False G201466
TU273606 other upstream 981657 33267043 ~ 33274907 (+) True G201466
TU273578 other upstream 1278699 32974320 ~ 32977865 (+) False bud31
TU274673 other downstream 2318117 36589448 ~ 36940279 (+) True G202336
trnat-cgu_1 other downstream 2606492 36877823 ~ 36877894 (+) True trnat-cgu_1
TU274740 other downstream 2713735 36985066 ~ 36993326 (+) False LOC103041887

Expression Profile